Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00409 ATGGGGAGAAAACTCATAGTCACCAGATTATCTTTTTACATTACACAGGACAAGCTGCAGAAGTTGTTCGCTCCGTTCGGACAACTTGCTAGTGTTAATCTCGTGTTTGATCCTAGAACTAAAAGACCCAAAGGGTATGGGTTTGTCTCCTACAACACTGAAATTGAAGCGGAAAAGGCTCTGAAAGCCATGAATGGCAGGATTGTTGATGGAAGGCTGCTTTTGGTTGAACCTGCCGGCGATAAATGA 249 0.4378 MGRKLIVTRLSFYITQDKLQKLFAPFGQLASVNLVFDPRTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPAGDK 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00409 82 Gene3D - 1 82 IPR012677 -
Vian11g00409 82 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 81 IPR000504 GO:0003723
Vian11g00409 82 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 4 80 - -
Vian11g00409 82 SMART rrm1_1 4 77 IPR000504 GO:0003723
Vian11g00409 82 SUPERFAMILY RNA-binding domain, RBD 3 80 IPR035979 GO:0003676
Vian11g00409 82 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00409 Vian-Chr11 3831061 3832358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00409 4 78 Eukaryotic Initiation Factors Gene Family AT2G23350 28.000 3.68e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00409 K13195 - pvu:PHAVU_005G141700g 129.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00409 11 3831061 3832358 Vian11g00409 11 3831061 3832358 ECH