Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00378 ATGTTTGGTGGGAAGGTCAGGAAAAGTAACGAGGAAGTTGTAGATCTGAGAGCACTATTGATGCTTTGTGCACAGGCTGTTGCTTCTGATAGTCCTTCATTTGCAAAGCAACTATTAAAGCAGATTAAGCAGCATTCTTCTCCAATAGGGGATGATACTCAGAGGCTTGCACATTACTTTGGAAACGCCCTTGGAGCATGCTTGGATGGAACCGGTTTCCAGGTTTATAGTGTTCTATCCTCCAAAAGAATCTCTGCCAAAGACATGGTAAAAGCTTACTGTGCATATGCTTCAGTGTGCCCGTTTGAAAAGATTACAATAATTTTTGCCAACAAATCAATTTGTTTTCAATCTGAGAATGCAGAAACTGTTCATATCATAGACTTTGGTATCCGCTATGGCTTCAAGTGGCCTTCACTTATCAGCATCCTATCAAAACGTCCCGGTGGACCACCCAAGCTTCGCATCACGGGTATAGATCAGCCACAGCCAGGTTTCAGGCCAGAGGAAAGGGTGCTGGAGACGGGGCGTAGGCTTGAACATTATTGCAAGCGTTTCAATGTTCCGTTCGAGTTCAATGCTATTGCAAGAAAATGGGACACCATCAGATTTGAGGACCTCAAGATAGAGAAAAACGAATTTGTGGCTGTGAACTGCATGTTTGAGTTGGAGCATCTACTTGACGAGTCTGTGGTGTTGGATAATCCAAGGGATGCTGTTTTGAGGTTGATTAAGAAGGCAAATCCTGGCATATTTGTGCACAGCATTGTCAACGGCTCCCATGATGTGCCATTCTTTGTGTCACGGTTCCGAGAGGCTCTCTTCCACTACTCTGCACTGTTTAACATGCTTGAAACCAACATTGATCGTGAAGATCCTACGAGGTTGATGTTTGAGAAGGATTTGTTTGGACGAGAGATCATGAACATCGTAGCTTGTGAAGGTTGTGAGAGGGTTGAGAGGCCACAAACATACAAGCAATGGCAGCTTCAAAACATGAGAATTGGGTTTCGGTTACTTCCTTTGGATCAACGAGTCATTGACAGATTAAAGAAGAGGTTGAGACAGGATGCGCACGACACCAATTTCATGCTTGAGGTGGATGGTGGTTGGGTGCTACAAGGTTGGAAGGGTCGAATTCTACATGCTTCCTCTTGTTGGGTTCCGGCATAG 1173 0.4459 MFGGKVRKSNEEVVDLRALLMLCAQAVASDSPSFAKQLLKQIKQHSSPIGDDTQRLAHYFGNALGACLDGTGFQVYSVLSSKRISAKDMVKAYCAYASVCPFEKITIIFANKSICFQSENAETVHIIDFGIRYGFKWPSLISILSKRPGGPPKLRITGIDQPQPGFRPEERVLETGRRLEHYCKRFNVPFEFNAIARKWDTIRFEDLKIEKNEFVAVNCMFELEHLLDESVVLDNPRDAVLRLIKKANPGIFVHSIVNGSHDVPFFVSRFREALFHYSALFNMLETNIDREDPTRLMFEKDLFGREIMNIVACEGCERVERPQTYKQWQLQNMRIGFRLLPLDQRVIDRLKKRLRQDAHDTNFMLEVDGGWVLQGWKGRILHASSCWVPA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00378 390 ProSiteProfiles GRAS family profile. 7 388 IPR005202 -
Vian11g00378 390 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 377 IPR005202 -
Vian11g00378 390 Pfam GRAS domain family 16 387 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00378 Vian-Chr11 3516061 3517233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00378 9 390 GRAS Transcription Factor Family AT1G07530 58.747 2.87e-170 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian11g00378 GRAS 1.5e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00378 - - gmx:100780343 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00378 11 3516061 3517233 Vian11g00378 11 3516061 3517233 ECH