Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00377 ATGGATCCAAACACTGTCATGAGCAGTTACGAGTTTGATGAATGGGATCTCAATGGACACTACACCAACCTCTTCACGGATCCTTTTTTCTCTCAGTCCGATATGGGCCCACCTGAGTTTTCTCCAAATACAATTTTAAACTCTGACCCGCTTATTTCGTCCTCCGCCGACTCCGCCGCTATGGTGGCTACGGTTGAGGAAGACACTGATTTTTCAGAAACCTTCAAGTTCATAAGTCAAATTCTCATGGAAGAGAACTTTGAACAGAAACCTTGTATGTGCTATGACCCTTTGACTCTGCAACACACTGAGAAATCATTCTATGATGCTTTGGAATTGGAACCGCCACTGCCTCTTTCCCCTAATCAGCACCCGCTTGAGAGCCCCGATGGTAATTCTTCCAATTCCACTACTGATTCAGCCAATTCTCACGACTTGAAGCCTTCTTCACCCAATACACCTGTTTCTGGTGGTGGTGAGGCTTTGCATTCCTCTACCCACGCGCCCTCTTTCTTTGTTCCTCCGTCTGCTTTGACAAAAATTAACGATGGAACCCTGGATATGGATTCTTCTGTGAGCAAGCTCTTGGCTGAAAATATTTTCAATGATGCAGAATCTATGTTGCAGTTTAGGAGAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCTCAGAGACCTCAGCTTTTCACTGGGTTGGAGAGCGCCACCGATTCTGCGGAACCAGAGGTAGGAGGGGAGGTAACCGTTAAGCGTGAGAATTCAATTGGGGTGAAGAGTAGAAAGAATCACGCGCGCCAACAAGATGAAGAAGAAGAAAGAAGCAACAAACACTCTGAGGTTTGTGTTGATGAGGAGAATGAAATATCTGAAATATTTGATAAGGTATTGCTTAGTGTTGAAAATGTGCCACTGTGTGCTAGTAAGAATGTATCTGTGGCAGTGGGAGATGGTAACGCAAAGCTGAGTGAGCAATCGCCTTCGGTTGATGTAGGGAAGGTTCGTTCCAAGAGGCAAGGGAAGAAGAAGGAAACAGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCACAAGCTGTGTCTGCCAGTGACAACAGGACTGCTAATGAACTACTGAAGCAGATTAGGCAGCATTCTTCTGCTTTGGGTGATGCCTCACAAAGGTTGGCTCATTATGTGGGCAATGCTTTGGAGGCTCGCTTGGTTGGTGCCGGAACTGGAACACAGATATTTTATATGAGCTACAGGAACTTCACTACTACTGATTTCCTGAAAGCGTACCAAGTTTTCATATCTGCCTGCCCTTTCAAGAAATTTGCACATTTCTTTGCAAATAAAATGATTATGAAAACAGCAGAAAAGGCAGAAACTCTTCATATTATTGACTTTGGTATCTTGTATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTATCAAGTAGAACTGGAGGACCTCCCAAGCTGCGCATCACAGGAATAGAGTATCCCCAACCAGGCTTTCGCCCATCCGAAAGAATCGAGGAGACTGGTCGTCGTCTAGCTAAGTATTGCAACCGATTCAATGTTCCCTTTGAGTACAAGGCCATACCATCAAGAAACTGGGAAACCATTCAAATTGAAGACCTTAAGATTGAGAGCAATGAGGTGCTTGCTGTGAACTGTCTGGTAAGGTTTAAGAATTTGCTTGACGAATCAATTGAAGTGAGCAGTCCCAAAAATGCTGTTCTGAATTTAATCAGGAAGATGAATCCGCATATTTTTGTTCAATCCGTGGTAAATGGATCTTATAATGCCCCTTTCTTTGTCACGCGCTTCCGGGAGGCACTGTTCCATTATTCTTCAATTTATGATATGTTTGATACTCTGGTATCCCGTGAAAATGAATGGAGGTTGATGCTTGAGAGAGAATTTTTGGGTCGGGAGATCATGAATGTTGTAGCATGTGAAGCTCTTGAAAGGGTTGAGAGGCCTGAAACATACAAACAATGGCAGGTTAGGAATACTAGAGCTGGTTTTAGGCAGCTACCACTGGACAAGGAGTTAATGGCCAAATTTAGGAACAAGTTAAGGGAATGGTACCACAAGGATTTTGTCTTTGATGAAGATGGCGGCTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCATCTTGTTGGGTGCCAGCATAA 2166 0.44 MDPNTVMSSYEFDEWDLNGHYTNLFTDPFFSQSDMGPPEFSPNTILNSDPLISSSADSAAMVATVEEDTDFSETFKFISQILMEENFEQKPCMCYDPLTLQHTEKSFYDALELEPPLPLSPNQHPLESPDGNSSNSTTDSANSHDLKPSSPNTPVSGGGEALHSSTHAPSFFVPPSALTKINDGTLDMDSSVSKLLAENIFNDAESMLQFRRGLEEASKFLPQRPQLFTGLESATDSAEPEVGGEVTVKRENSIGVKSRKNHARQQDEEEERSNKHSEVCVDEENEISEIFDKVLLSVENVPLCASKNVSVAVGDGNAKLSEQSPSVDVGKVRSKRQGKKKETVDLRTLLVLCAQAVSASDNRTANELLKQIRQHSSALGDASQRLAHYVGNALEARLVGAGTGTQIFYMSYRNFTTTDFLKAYQVFISACPFKKFAHFFANKMIMKTAEKAETLHIIDFGILYGFQWPILIKFLSSRTGGPPKLRITGIEYPQPGFRPSERIEETGRRLAKYCNRFNVPFEYKAIPSRNWETIQIEDLKIESNEVLAVNCLVRFKNLLDESIEVSSPKNAVLNLIRKMNPHIFVQSVVNGSYNAPFFVTRFREALFHYSSIYDMFDTLVSRENEWRLMLEREFLGREIMNVVACEALERVERPETYKQWQVRNTRAGFRQLPLDKELMAKFRNKLREWYHKDFVFDEDGGWMLQGWKGRILYASSCWVPA 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00377 721 ProSiteProfiles GRAS family profile. 337 719 IPR005202 -
Vian11g00377 721 MobiDBLite consensus disorder prediction 252 277 - -
Vian11g00377 721 MobiDBLite consensus disorder prediction 249 277 - -
Vian11g00377 721 Pfam GRAS domain family 346 718 IPR005202 -
Vian11g00377 721 MobiDBLite consensus disorder prediction 125 160 - -
Vian11g00377 721 MobiDBLite consensus disorder prediction 114 173 - -
Vian11g00377 721 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 272 714 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00377 Vian-Chr11 3488260 3490425 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00377 33 721 GRAS Transcription Factor Family AT1G07530 48.840 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian11g00377 GRAS 1.4e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00377 - - aprc:113855970 1053.51