Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00367 ATGCCGACTGTGCAAATCGCCGAGCATCAGGTCGTGACAGAGACGCACTGCGCCGTTTGCAAAGAGGCCTTCGAGCTAGGCGCGTTGGCGCGTGAGATGCCGTGCAAGCACCTTTACCACTCCGATTGCATTCTCCCGTGGCTGTCGATGCGAAACTCGTGCCCGGTGTGCCGCCACGAGCTGCCGTCGGAGCAAGCGTCATCGGAGAGCAGAGTTGCTGGCCAGATCGAAGAGGAAGCGGTAGGGTTGACCATATGGAGGCTGCCTGGCGGCGGATTCGCCGTGGGTAGGTTCGCCGGTGAGAGCCACTTGCCGGTGGTGTACACGGAGATGGAGAATGGTGGGAATTCGAGCGAAGGTTCTAGGAGAATCTCTCTGTCAGTTGGAAGCGGGAGAGTGAGGGAAAGTCGAGGTGGAATTGGCAGAATGTTCCGGAATTGGTTTGGGAGAATTGGGGCTTTGACTAGAAGCCGTAGCCTTTCAACTTCGCTCTTCAGTAGAAGAAGAAGTTCCACGAGAACCTGGGTTTTGGAAGATTGA 540 0.5667 MPTVQIAEHQVVTETHCAVCKEAFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQASSESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMENGGNSSEGSRRISLSVGSGRVRESRGGIGRMFRNWFGRIGALTRSRSLSTSLFSRRRSSTRTWVLED 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00367 179 ProSiteProfiles Zinc finger RING-type profile. 17 58 IPR001841 -
Vian11g00367 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 75 IPR013083 -
Vian11g00367 179 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 62 - -
Vian11g00367 179 Pfam Protein of unknown function (DUF1117) 81 170 IPR010543 -
Vian11g00367 179 SUPERFAMILY RING/U-box 3 63 - -
Vian11g00367 179 CDD RING-H2_RNF126-like 17 58 - -
Vian11g00367 179 Pfam Ring finger domain 16 58 IPR001841 -
Vian11g00367 179 SMART ring_2 17 57 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00367 Vian-Chr11 3413745 3414284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00367 1 69 C3H Transcription Factor Family AT5G01980 52.174 5.36e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00367 K11982 - gmx:100784822 283.878