Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00352 ATGAGGAAGCCGGAACTGTGTAGTGGTAAAGACAGCAAGTTTAGAAAGGGATTGTGGTCGCCAGAAGAAGATGAGAAACTGATGAACTACATGCTGAACAATGGACAAGGTTGTTGGAGCGACGTGGCAAGAAATGCTGGCCTCCAAAGATGTGGCAAAAGTTGTCGGCTACGATGGATCAATTACCTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCTTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGGAGAACCGACAATGAGATAAAAAACTTTTGGAATTCAACCATAAAGAAAAGACTCAAGAACATGTCTACGACCACAGCTTCAACCTCACCAAATTCAAGTGAGACCTCGTCTGAACCAAGTAATAAAGACCTCAACATGGGAGGGTTTATGCCTACACAACATCATCAGCATGCAACCTTTGTGCCTGTGTTTGGTTCATCTCCAACACAATCAATGCAAACAACAGTTTTCAACACAATGATCGAAAGGTTGGATCATGAACTAAACATGCCACACGTTGGTGAATACTTGGAAGGCACAGGGCCATGCTTTTCTCAAAATGAAGCTCACAACAAAAGTTCTTATTTAGAAAACGGAGTCTTTGGGAGTGTAAATATTGGGATTGAAGGGGATATGTTTGTTCCTCCCCTTGAGAATCTAAACACCAGCAACAATCATAACCTGAGTAGCACCTGCAAGAGTTACTTTGATGACATAAATAGTATCCTTAACAACTGCAACATTGGCATATCTAGTGAAAATAAGGAAGGAGTGGAGAATTTGTTTCAGCAAGATGCAGAATGGGACTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTCCGTTTGTTGATTTTTCATTCTGA 924 0.421 MRKPELCSGKDSKFRKGLWSPEEDEKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSFLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSTTTASTSPNSSETSSEPSNKDLNMGGFMPTQHHQHATFVPVFGSSPTQSMQTTVFNTMIERLDHELNMPHVGEYLEGTGPCFSQNEAHNKSSYLENGVFGSVNIGIEGDMFVPPLENLNTSNNHNLSSTCKSYFDDINSILNNCNIGISSENKEGVENLFQQDAEWDFEELMKDVSSFPFVDFSF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00352 307 SMART sant 68 116 IPR001005 -
Vian11g00352 307 SMART sant 15 65 IPR001005 -
Vian11g00352 307 FunFam MYB transcription factor 13 69 - -
Vian11g00352 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vian11g00352 307 FunFam Transcription factor MYB46 70 142 - -
Vian11g00352 307 CDD SANT 71 111 IPR001005 -
Vian11g00352 307 Gene3D - 70 144 - -
Vian11g00352 307 Gene3D - 16 68 - -
Vian11g00352 307 PANTHER MYB DOMAIN PROTEIN 55 7 294 - -
Vian11g00352 307 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vian11g00352 307 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Vian11g00352 307 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vian11g00352 307 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vian11g00352 307 MobiDBLite consensus disorder prediction 120 142 - -
Vian11g00352 307 CDD SANT 19 63 IPR001005 -
Vian11g00352 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vian11g00352 307 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00352 Vian-Chr11 3326957 3329239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00352 1 305 MYB Transcription Factor Family AT3G08500 44.857 1.72e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian11g00352 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00352 K09422 - gmx:100799410 404.06