Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian11g00349 | ATGGCGGCGGCGGCAGCGTCGCAGGGGTACCGCCAACCTTCGACAATCGAGGAAGTGAGAACCCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAGGCGTACCTCAGCCACTGTTTCGCCCACACCGGCGAGGTTCTTTCCATCAAGATCATCCGCAACAAGATGACGGGCCAACCCGAGGGTTACGGTTTCGTCGAGTTTGTTTCCCACGAGGCAGCGGAGCGCGTACTCCAGACCTACAACGGCATGCAAATGCCCGGCACCGAACAAACCTTCAGGCTCAATTGGGCCTCTTTCGGCATCGGTGAGCGCAGGCCCGATGCGGGCCCAGAATACTCCATCTTCGTGGGCGATCTTGCGCCCGACGTAACCGACTATCTTCTCCAAGAAACCTTCCGGGCCCACTACCACTCCATTCGCGGCGCCAAGGTCGTCACGGATCCCAACACGGGCCGCTCCAAGGGCTACGGCTTCGTCAAATTCTCCGACGAGAACGAACGCAACCGCGCCATGACCGAGATGAACGGGGTTTATTGCTCCACTAGAGCCATGCGCATTAGTGCCGCCACGCCCAAGAAAAGCACCAGTAGTTACGCCGCCGAGCCTGCGCCTTTCACCAAACCTGTGTTCCAGGCTCCGGCTTACACTGCGCCGGTTCAAGTTCAACCTCCGGAGTATGATGTTAATAACACTACCATTTTTGTTGGTAATTTGGATCCTAATGTGTCTGAGGAGGAATTGAAGCAAAACTTTCTGCAATTTGGAGAAATTGTCTCTGTTAAAATTCCGCCGGGCAAGGGATGTGGCTTTGTTCAATTTAGAACTAGAGCATCAGCTGAAGAAGTTATTCAGAGAACGCAGGGAATGATGATAGGCCAACAAGTGGTCAGGATTTCTTGGGGTAGGACCCTAGCAGCTAGACAGGACTTATCTGGTGGGTGGGGACAACAGATGGATCCAAGTCAATGGAATGCCTACTATGGATATGGGCAGGGTTATGAAACATATGGTTATGGGGCTGCTCAAGACCCTTTATTGAATACATATGGTGGCTATCAACAGTATCCCCAACAGGTTGGAGGTGCTCAAGACCCAACTGGTATGCCTGCACCTACCATGGAACCAAGGGAGGAATTGTATGATCCCTCGGCAATGTCTGATGTTGAGAAGTTAAATGATGCATACCTCAGAGTACATGGAAATTCCATTTTAGGGCGATCGCTATGGCAAAAAACTTCTTCATCATCCTTACCAAAAACTTAA | 1266 | 0.5174 | MAAAAASQGYRQPSTIEEVRTLWIGDLQYWVDEAYLSHCFAHTGEVLSIKIIRNKMTGQPEGYGFVEFVSHEAAERVLQTYNGMQMPGTEQTFRLNWASFGIGERRPDAGPEYSIFVGDLAPDVTDYLLQETFRAHYHSIRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRAMRISAATPKKSTSSYAAEPAPFTKPVFQAPAYTAPVQVQPPEYDVNNTTIFVGNLDPNVSEEELKQNFLQFGEIVSVKIPPGKGCGFVQFRTRASAEEVIQRTQGMMIGQQVVRISWGRTLAARQDLSGGWGQQMDPSQWNAYYGYGQGYETYGYGAAQDPLLNTYGGYQQYPQQVGGAQDPTGMPAPTMEPREELYDPSAMSDVEKLNDAYLRVHGNSILGRSLWQKTSSSSLPKT | 421 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian11g00349 | 421 | SUPERFAMILY | RNA-binding domain, RBD | 12 | 88 | IPR035979 | GO:0003676 | |
Vian11g00349 | 421 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 234 | 297 | IPR000504 | GO:0003723 | |
Vian11g00349 | 421 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 22 | 90 | IPR000504 | GO:0003723 | |
Vian11g00349 | 421 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 115 | 179 | IPR000504 | GO:0003723 | |
Vian11g00349 | 421 | SUPERFAMILY | RNA-binding domain, RBD | 211 | 333 | IPR035979 | GO:0003676 | |
Vian11g00349 | 421 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 20 | 100 | IPR000504 | GO:0003723 | |
Vian11g00349 | 421 | SUPERFAMILY | RNA-binding domain, RBD | 106 | 197 | IPR035979 | GO:0003676 | |
Vian11g00349 | 421 | Gene3D | - | 103 | 202 | IPR012677 | - | |
Vian11g00349 | 421 | CDD | RRM2_SECp43_like | 112 | 191 | - | - | |
Vian11g00349 | 421 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 15 | 307 | - | - | |
Vian11g00349 | 421 | Gene3D | - | 19 | 99 | IPR012677 | - | |
Vian11g00349 | 421 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 232 | 304 | IPR000504 | GO:0003723 | |
Vian11g00349 | 421 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 113 | 192 | IPR000504 | GO:0003723 | |
Vian11g00349 | 421 | FunFam | Polyadenylate-binding protein RBP47B | 19 | 99 | - | - | |
Vian11g00349 | 421 | FunFam | polyadenylate-binding protein RBP45 | 215 | 312 | - | - | |
Vian11g00349 | 421 | SMART | rrm1_1 | 114 | 188 | IPR000504 | GO:0003723 | |
Vian11g00349 | 421 | SMART | rrm1_1 | 233 | 300 | IPR000504 | GO:0003723 | |
Vian11g00349 | 421 | SMART | rrm1_1 | 21 | 96 | IPR000504 | GO:0003723 | |
Vian11g00349 | 421 | CDD | RRM1_SECp43_like | 21 | 101 | - | - | |
Vian11g00349 | 421 | Gene3D | - | 218 | 309 | IPR012677 | - | |
Vian11g00349 | 421 | FunFam | Polyadenylate-binding protein RBP47B | 101 | 202 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian11g00349 | Vian-Chr11 | 3286269 | 3289110 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian11g00349 | 19 | 379 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 26.720 | 7.76e-25 | 105 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian11g00349 | - | - | gmx:100799421 | 674.47 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian11g00349 | 11 | 3286269 | 3289110 | Vian11g00349 | 11 | 3286269 | 3289110 | ECH | |
Vian11g00349 | 11 | 3286269 | 3289110 | Vian5g01362 | 5 | 36220365 | 36224095 | PCT |