Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00349 ATGGCGGCGGCGGCAGCGTCGCAGGGGTACCGCCAACCTTCGACAATCGAGGAAGTGAGAACCCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAGGCGTACCTCAGCCACTGTTTCGCCCACACCGGCGAGGTTCTTTCCATCAAGATCATCCGCAACAAGATGACGGGCCAACCCGAGGGTTACGGTTTCGTCGAGTTTGTTTCCCACGAGGCAGCGGAGCGCGTACTCCAGACCTACAACGGCATGCAAATGCCCGGCACCGAACAAACCTTCAGGCTCAATTGGGCCTCTTTCGGCATCGGTGAGCGCAGGCCCGATGCGGGCCCAGAATACTCCATCTTCGTGGGCGATCTTGCGCCCGACGTAACCGACTATCTTCTCCAAGAAACCTTCCGGGCCCACTACCACTCCATTCGCGGCGCCAAGGTCGTCACGGATCCCAACACGGGCCGCTCCAAGGGCTACGGCTTCGTCAAATTCTCCGACGAGAACGAACGCAACCGCGCCATGACCGAGATGAACGGGGTTTATTGCTCCACTAGAGCCATGCGCATTAGTGCCGCCACGCCCAAGAAAAGCACCAGTAGTTACGCCGCCGAGCCTGCGCCTTTCACCAAACCTGTGTTCCAGGCTCCGGCTTACACTGCGCCGGTTCAAGTTCAACCTCCGGAGTATGATGTTAATAACACTACCATTTTTGTTGGTAATTTGGATCCTAATGTGTCTGAGGAGGAATTGAAGCAAAACTTTCTGCAATTTGGAGAAATTGTCTCTGTTAAAATTCCGCCGGGCAAGGGATGTGGCTTTGTTCAATTTAGAACTAGAGCATCAGCTGAAGAAGTTATTCAGAGAACGCAGGGAATGATGATAGGCCAACAAGTGGTCAGGATTTCTTGGGGTAGGACCCTAGCAGCTAGACAGGACTTATCTGGTGGGTGGGGACAACAGATGGATCCAAGTCAATGGAATGCCTACTATGGATATGGGCAGGGTTATGAAACATATGGTTATGGGGCTGCTCAAGACCCTTTATTGAATACATATGGTGGCTATCAACAGTATCCCCAACAGGTTGGAGGTGCTCAAGACCCAACTGGTATGCCTGCACCTACCATGGAACCAAGGGAGGAATTGTATGATCCCTCGGCAATGTCTGATGTTGAGAAGTTAAATGATGCATACCTCAGAGTACATGGAAATTCCATTTTAGGGCGATCGCTATGGCAAAAAACTTCTTCATCATCCTTACCAAAAACTTAA 1266 0.5174 MAAAAASQGYRQPSTIEEVRTLWIGDLQYWVDEAYLSHCFAHTGEVLSIKIIRNKMTGQPEGYGFVEFVSHEAAERVLQTYNGMQMPGTEQTFRLNWASFGIGERRPDAGPEYSIFVGDLAPDVTDYLLQETFRAHYHSIRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRAMRISAATPKKSTSSYAAEPAPFTKPVFQAPAYTAPVQVQPPEYDVNNTTIFVGNLDPNVSEEELKQNFLQFGEIVSVKIPPGKGCGFVQFRTRASAEEVIQRTQGMMIGQQVVRISWGRTLAARQDLSGGWGQQMDPSQWNAYYGYGQGYETYGYGAAQDPLLNTYGGYQQYPQQVGGAQDPTGMPAPTMEPREELYDPSAMSDVEKLNDAYLRVHGNSILGRSLWQKTSSSSLPKT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00349 421 SUPERFAMILY RNA-binding domain, RBD 12 88 IPR035979 GO:0003676
Vian11g00349 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 297 IPR000504 GO:0003723
Vian11g00349 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 90 IPR000504 GO:0003723
Vian11g00349 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 179 IPR000504 GO:0003723
Vian11g00349 421 SUPERFAMILY RNA-binding domain, RBD 211 333 IPR035979 GO:0003676
Vian11g00349 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 100 IPR000504 GO:0003723
Vian11g00349 421 SUPERFAMILY RNA-binding domain, RBD 106 197 IPR035979 GO:0003676
Vian11g00349 421 Gene3D - 103 202 IPR012677 -
Vian11g00349 421 CDD RRM2_SECp43_like 112 191 - -
Vian11g00349 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 307 - -
Vian11g00349 421 Gene3D - 19 99 IPR012677 -
Vian11g00349 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 304 IPR000504 GO:0003723
Vian11g00349 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 192 IPR000504 GO:0003723
Vian11g00349 421 FunFam Polyadenylate-binding protein RBP47B 19 99 - -
Vian11g00349 421 FunFam polyadenylate-binding protein RBP45 215 312 - -
Vian11g00349 421 SMART rrm1_1 114 188 IPR000504 GO:0003723
Vian11g00349 421 SMART rrm1_1 233 300 IPR000504 GO:0003723
Vian11g00349 421 SMART rrm1_1 21 96 IPR000504 GO:0003723
Vian11g00349 421 CDD RRM1_SECp43_like 21 101 - -
Vian11g00349 421 Gene3D - 218 309 IPR012677 -
Vian11g00349 421 FunFam Polyadenylate-binding protein RBP47B 101 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00349 Vian-Chr11 3286269 3289110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00349 19 379 Eukaryotic Initiation Factors Gene Family AT2G23350 26.720 7.76e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00349 - - gmx:100799421 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00349 11 3286269 3289110 Vian11g00349 11 3286269 3289110 ECH
Vian11g00349 11 3286269 3289110 Vian5g01362 5 36220365 36224095 PCT