Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00345 ATGGAGATCCGTTACAATAACATGAGCTATCCCTACAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTCACATACGAACATGTTAACTTCATTTTTTCTGGTGCCTCACATGCTCAGGATAGTAATGGTTACGAGGTGAATTATCATGAACAATTGATGGATGAGTATAGAAGGCACTCGGAAAAGTCTGCAACAATCAATGAACAAATGGCAACAGTACGTATAGAAAGGGAAGGAGTAAACAATGTCACACTAGACAGTTCTACTGAATGTCCGAGAAGGCATCATAATGATTTTAATGACTATGAGGTCAATTGGGAAGACCATATTGATCCTGACAACATGACCTATGAGTATTCTTTTATCTTCTCTGTAAATCCCTTTGTACTTGCTAATGCTGTGCCACCTGGTGATGGAAAAGGCTTGGTTGTTGTTACCAGTGAGACAGTTGGAACTGAGTGTCGTGGTCTCACCCAAGAACAAATTTCATCGATTCCAGTATCGAAGTACGAGTGTGGACGCTTTTTCTTCTTTAGGAAGAAGTCACGGGAGGAGAGATGCGTGATTTGTCAGATGGAATATAGAAGAGGGGACAAGAGGATGACTTTACCATGCAAACATGCCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCAAGTTGTTTAGGAATGAGATCTCGAAGAATAGACTCCGAACTTCAGAATCTATCAAAGCATTACTGA 741 0.4062 MEIRYNNMSYPYSTAGSFIEYVEGLTYEHVNFIFSGASHAQDSNGYEVNYHEQLMDEYRRHSEKSATINEQMATVRIEREGVNNVTLDSSTECPRRHHNDFNDYEVNWEDHIDPDNMTYEYSFIFSVNPFVLANAVPPGDGKGLVVVTSETVGTECRGLTQEQISSIPVSKYECGRFFFFRKKSREERCVICQMEYRRGDKRMTLPCKHAYHASCGNKWLSINKASCLGMRSRRIDSELQNLSKHY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00345 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Vian11g00345 246 ProSiteProfiles Zinc finger RING-type profile. 189 227 IPR001841 -
Vian11g00345 246 FunFam E3 ubiquitin ligase BIG BROTHER 149 232 - -
Vian11g00345 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 228 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vian11g00345 246 SUPERFAMILY RING/U-box 185 227 - -
Vian11g00345 246 Pfam Ring finger domain 188 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00345 Vian-Chr11 3248883 3251790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00345 2 224 C3H Transcription Factor Family AT3G63530 32.129 7.73e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00345 K19045 - gmx:100805963 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00345 11 3248883 3251790 Vian11g00345 11 3248883 3251790 ECH
Vian11g00345 11 3248883 3251790 Vian5g01370 5 36302268 36307778 PCT