Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00341 ATGACTCACCCCTTTTGCTCCAACGACTTCAATGCCTGGTTTGACCTCAATTCTCCATTCCTTTTCTCTTCTTCTTCATCACCTTGCTCCAACCCTCCATTCTATTTTCCTTCTGCTTTTCATCATCATCAATCTTCTCCCCCCAAAGAAGCACTTCCTTTCCTTAACCTAAGCCTTGCAAGGGGTGAAGATCTTGAATCTTCCTTCAGTGCCATGGAAGTCAACAGAGAGAAGGAGAGAGAATCAAGCATATCGTCTAATAATAATAACTCTTTGGATGATGAAACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAACCACTACTGCTTCTGCTGATTCAACTTCAAACACATACTCAGACAGAGAAAAAGCCATTGCTTGTGAGTATTCTCCTAGTAGAATTAACAAGGGTCAGTATTGGATTCCTACCCCTGCTCAAATTCTCATCGGTCCAACACAGTTCTCCTGCCCCCTTTGTTTCAAGACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTGAGGGGAACTCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGTTGTGCTCCTGAATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGCTGCAAAGCTTTTGCTGTTAGGGGTGATTGGAGGACCCATGAGAAGAACTGTGGGAAGCTCTGGTATTGCTCTTGTGGGTCCGATTTCAAGCACAAAAGATCCCTCAAAGATCATATCAAGGCTTTTGGGAATGGACACAAAGCTTATGGAATCGACTGTTTTGATCATGATGATGAAGCTGGCTCTGAAATTGAGCAAGAAAATGTCAATGAACCTTTAGTTTCAAGTCATGGTTGA 969 0.4314 MTHPFCSNDFNAWFDLNSPFLFSSSSSPCSNPPFYFPSAFHHHQSSPPKEALPFLNLSLARGEDLESSFSAMEVNREKERESSISSNNNNSLDDETVTVALHLGLPTTTASADSTSNTYSDREKAIACEYSPSRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPECKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCFDHDDEAGSEIEQENVNEPLVSSHG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00341 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Vian11g00341 322 SUPERFAMILY beta-beta-alpha zinc fingers 128 177 IPR036236 -
Vian11g00341 322 Gene3D Classic Zinc Finger 154 177 - -
Vian11g00341 322 FunFam Zinc finger protein WIP2 208 290 - -
Vian11g00341 322 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Vian11g00341 322 PANTHER ZINC FINGER PROTEIN WIP2 31 312 IPR043584 GO:0003700|GO:0010468
Vian11g00341 322 SUPERFAMILY beta-beta-alpha zinc fingers 221 259 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00341 Vian-Chr11 3214370 3216386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00341 97 319 C2H2 Transcription Factor Family AT3G57670 69.732 8.95e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g00341 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00341 - - vum:124825208 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00341 11 3214370 3216386 Vian11g00341 11 3214370 3216386 ECH
Vian2g01969 2 39237917 39240257 Vian11g00341 11 3214370 3216386 ECH
Vian3g02490 3 38776373 38778464 Vian11g00341 11 3214370 3216386 ECH
Vian11g00341 11 3214370 3216386 Vian5g01371 5 36314171 36316295 PCT