Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00339 ATGGCAGAGAAACTTGACCTCGACAACCTTAAGGTACTGAAAGTTTTAGGCAAAGGGGCCATGGGCACTGTGTTTCTCGTGCAACACAACTCCGGCCACGTGGCTCTCAAAGTGGTCGACAAATCATCATCCCTCCACGACGGTGCTCGCCGCGCCCACTGGGAAATCACTGTTCTCTCTCGCTTATCCCACCCCTTCCTCCCCACCCTACTGGGTTCCTTTGAGTCCAACAACTTAATGGGCTGGGCCGTCCCCTACTGCCCTGGCGGCGACCTCAACCACCTCCGCTATCGCCAAACGGATCACATATTCTCCCCCGCCGTCGTCCGCTTCTACCTCGCCGAGATTCTCTGCGCTCTCCACCACCTTCACTCCATGCACATCGTGTACCGCGACCTCAAACCCGAAAACGTCCTCATTCAACAATCCGGCCACGTCACTCTCACCGACTTCGACCTCTCCCGAACTCTCTCTCCCACCAAAACCAACACCTCCTCTCCCTCCAACTCCCACATTCCTGACACCGCCCCGCGCAAGCCCCGCCGCAACTTCCGCTGGGCCCCACTCACGAAGACCCCCAAGTCCGCCCGAGTCACCCCCGCAGCTCGCCGCGCCGCGCCAAGCTTCGAGCGCTCGAACTCGTTCGTGGGCACCGAGGAGTACATCGCGCCGGAGGTCCTCCGAGGCGAGGGGCACGGCTTCGCCGTTGACTGGTGGGCCCTCGGCGTCCTCGCCCACGAGATGGTGTACGGAACCACGCCGTTCAAGGGGAGGAATCGCAAGGAAACGTTTCGCAACGTGTTGTTGAAGACGCCCGAGTTTGTCGGGAAGAAAACAGCGTTGACGGACCTAATATCTCGGTTGCTAGAAAAGGACCCTTCCAAGCGTTTGGGTTATGTTCGCGGCGCCACCGAGATCAAGGAGCACGAGTTCTTCAGAGGGGTTAAATGGGACCTACTAACGGAGGTTGTGCGGCCGCCGTTTATTCCTTCAAGAGAAGAGGTTACGAAGCCTTTCGCCGATGGACTTGACGTAAGGGGATACTTTCAGAGTCTGAAATCTCCACCGTCTTTGCCCCCCTCGCCGTTACGGTCACCGTCGTGTGAGTTTCAGAAAAACGTTTCTTTACCGGAATTCTGA 1140 0.5807 MAEKLDLDNLKVLKVLGKGAMGTVFLVQHNSGHVALKVVDKSSSLHDGARRAHWEITVLSRLSHPFLPTLLGSFESNNLMGWAVPYCPGGDLNHLRYRQTDHIFSPAVVRFYLAEILCALHHLHSMHIVYRDLKPENVLIQQSGHVTLTDFDLSRTLSPTKTNTSSPSNSHIPDTAPRKPRRNFRWAPLTKTPKSARVTPAARRAAPSFERSNSFVGTEEYIAPEVLRGEGHGFAVDWWALGVLAHEMVYGTTPFKGRNRKETFRNVLLKTPEFVGKKTALTDLISRLLEKDPSKRLGYVRGATEIKEHEFFRGVKWDLLTEVVRPPFIPSREEVTKPFADGLDVRGYFQSLKSPPSLPPSPLRSPSCEFQKNVSLPEF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00339 379 PANTHER FLIPPASE KINASE 1-RELATED 4 333 - -
Vian11g00339 379 Gene3D Transferase(Phosphotransferase) domain 1 210 331 - -
Vian11g00339 379 SMART serkin_6 10 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00339 379 Gene3D Phosphorylase Kinase; domain 1 9 90 - -
Vian11g00339 379 FunFam Serine/threonine-protein kinase OXI1 210 331 - -
Vian11g00339 379 SUPERFAMILY Protein kinase-like (PK-like) 7 361 IPR011009 -
Vian11g00339 379 MobiDBLite consensus disorder prediction 157 188 - -
Vian11g00339 379 MobiDBLite consensus disorder prediction 157 173 - -
Vian11g00339 379 Pfam Protein kinase domain 11 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00339 379 Pfam Protein kinase domain 212 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00339 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vian11g00339 379 Gene3D Transferase(Phosphotransferase) domain 1 91 163 - -
Vian11g00339 379 ProSitePatterns Protein kinases ATP-binding region signature. 16 37 IPR017441 GO:0005524
Vian11g00339 379 FunFam Serine/threonine-protein kinase OXI1 91 159 - -
Vian11g00339 379 ProSiteProfiles Protein kinase domain profile. 10 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00339 Vian-Chr11 3203102 3204241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00339 3 379 AGC Kinase Gene Family AT3G20830 58.065 2.12e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vian11g00339 Pkinase 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00339 - - gmx:100802613 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00339 11 3203102 3204241 Vian11g00339 11 3203102 3204241 ECH
Vian11g00339 11 3203102 3204241 Vian5g01377 5 36384253 36385524 PCT