LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian11g00309	ATGGATTCCGAGGACGATATGCACGACGCCAACGATATCGAGTCACTCGATGACGATTTCTACAGTGGTGAGACCGAGGATGCTCCCATGGATTACTACAGTGACTACGATGACGTTGCCGACGACTATTTCGAAGACGCTGATGATTCTGACCGGATTGAGTCTCGTCGCCCGGAGCAAAATTTTACCATACTGAGGGAATTGGACATCCGGCAAAGGCAGGAGGATGACATCACAAGAGTATCCACAGTTCTCTCAATACCGCGGGTTTCCGCAAGCATCCTACTTCGTCACTATAATTGGAGTGTTAGTAAGGTGCATGATGCCTGGTTTGCTGATGAAGAACAAGTTCGAAAGACAGTTGGTTTCTTGGATAAGCCAGTTTTCCAAAATTCTAATGCTAGAGAGCTTACTTGTGGCATCTGTTTTGAGATGTATCCTCGTTCACGAGTTAAATCTGCTGCTTGTGGTCATCCTTACTGCCATTTGTGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCGGGATGTTTGGTGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGCATCTCTTGAAGATAAAGAGAAGTATGACCGTTACCTTCTGAGGTCCTATATTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAGTATGCAGTTACTTTTGATGCTGGAAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGTCCAGTGGACTGTGGCACTGTGTCAAAGTGGATTTTGAAAAATAGTGCAGAATCCGAGAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCAAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACTTGTACTCCACCTTGTAAATTTGAATTCTGCTGGCTATGCCTTGGTGCGTGGTCAGACCATGGTGAAAGGACGGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGCTGGAGAGGTACACACATTATTATGAGCGATGGGCCAGCAACCAATCTTCAAGGCAAAAGGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAAAAGCTTAGTGACACACAATGCCAGCCTGAATCACAGCTTAAGTTCATAACGGAGGCCTGGTTACAGATTGTTGAATGCAGGAGGGTGCTGAAATGGACATATGCATATGGGTACTATTTACCGGAGCATGAACATGCTAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTAAATGCCGATGGGCCATCCAGAGAATTCAATGACTTCCGCACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTCGAGAATTTGGTGAGGGCATTGGAGAATGGTTTATCTGATGTGGATAGTAATGGGGCTGCTTCGAGCAAAGCAACGAGCTCCAAAAATGCAGCAGGGAGCAGCAAAGGGAGAGGAGGAAGAGGAAAAACAACTATCCGAACTAGCATATCCAGCAGAATGACTGATGATAATCATTGGTCTTGTGAACATTGTACCTATGCAAATGTTAGGTCTGCCACCACATGCCAGATGTGCAATCAACAGCGGCGATGA	1773	0.4467	MDSEDDMHDANDIESLDDDFYSGETEDAPMDYYSDYDDVADDYFEDADDSDRIESRRPEQNFTILRELDIRQRQEDDITRVSTVLSIPRVSASILLRHYNWSVSKVHDAWFADEEQVRKTVGFLDKPVFQNSNARELTCGICFEMYPRSRVKSAACGHPYCHLCWAGYIGTSINDGPGCLVLRCPDPTCGAAVGQDMINLLASLEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKTTIRTSISSRMTDDNHWSCEHCTYANVRSATTCQMCNQQRR	590

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vian11g00309	590	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	69	436	IPR031127	GO:0004842\|GO:0016567
Vian11g00309	590	MobiDBLite	consensus disorder prediction	1	34	-	-
Vian11g00309	590	Gene3D	-	560	590	-	-
Vian11g00309	590	CDD	Rcat_RBR_ARI7-like	293	347	-	-
Vian11g00309	590	ProSitePatterns	Zinc finger RanBP2-type signature.	566	585	IPR001876	-
Vian11g00309	590	SMART	zf_4	564	588	IPR001876	-
Vian11g00309	590	MobiDBLite	consensus disorder prediction	522	558	-	-
Vian11g00309	590	Pfam	Ariadne domain	357	518	IPR045840	-
Vian11g00309	590	SMART	ibrneu5	283	344	IPR002867	GO:0008270
Vian11g00309	590	SMART	ibrneu5	208	270	IPR002867	GO:0008270

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian11g00309	Vian-Chr11	2876285	2888981	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian11g00309	17	589	ARIADNE family	AT1G65430	69.676	0.0	839

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian11g00309	K11968		-	gmx:100810427	1143.64

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian11g00309	11	2876285	2888981	Vian11g00309	11	2876285	2888981	ECH
	Vian11g00309	11	2876285	2888981	Vian5g01402	5	36682286	36689289	PCT

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