Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00288 ATGGATAAGGACAAATCTCTAGGTCACGGTGGAGGTTTGCCACCTCCCTCGGCACGTTATTCGGGTTACTCACCTTCCGGAACTGCGTTCAGTGTGAAATCTGAGCCGCCGTCGTCGTCGACGTCGTCGTATCTGCCACTGGCTCCGGGAATTTCCACACCGGAGTCTAGTGCGTTTAGTCATGATATTAGCAGAATGCCCGATAATCCTCCGAGAAATAGAGGTCACAGGCGTGCTCATTCCGAGATTCTTACCCTTCCGGATGATATTAGCTTTGACAGTGACCTTGGTGTGGTTGGAGGTGCCGATGGGCCTTCCTTCTCCGACGAAGCCGAGGAGGACTTGTTGTCTATGTACCTTGATATGGATAAGTTCAATTCGTCGTCGGCGACGTCCACGTTTCAAATGGGCGAACCGTCTGGTGCAGTGGGAGCGTCGGGTTCGGCATCGGGGGCACCCACCTCTTCTGCAGAGAATAGTGCTGTTGGAACTCTTGAACGGCCCAGAGTTAGACACCAGCATAGTCAATCCATGGATGGATCAACTACCATCAAGCCTGAGCTGCTGGTTTCTGGTTCGGAAGACTTGTCTGCGGCGGATTCCAAAAAAGCAATGTCAGCTGCTAAGCTTGCTGAGCTTGCCTTGATTGACCCCAAACGTGCGAAAAGGATATGGGCAAATAGACAGTCTGCTGCGAGATCAAAAGAGAGGAAGATGCGGTACATTGCTGAGCTTGAAAGGAAGGTACAAACGTTGCAAACGGAAGCAACATCTTTGTCTGCACAATTAAGTCTCTTGCAGAGGGATACAAATGGCTTGAATTCTGAGAACAGTGAACTGAAGCTGCGGTTACAAACCATGGAGCAACAAGTTCACTTGCAAGATGCACTAAATGACGCATTAAAAGAGGAAATTCAGCATTTGAAAATACTGACTGGACAAGCTATGCCACCTAATGGAGGAGGACCTATGCTGAACTTTGCCTCTTTTGGAGGGGGGCAGCAATTCTATCCCAATAATCATGCCATGCACACCCTTTTAGCTGCACAGCAGTTTCAACAACTCCAAATTCATCCTCAGAAGCAGCATCAATTTCAGCAGCTTCAACAACAAATGTTGCAACAGCAGCAGCAACAACAACAGAGGGAACAGCAGCACCAACAATCAAGCGACATGAAAATGAGAGAAGCTTCACCTACGCCATGTCCTCCCAAAGATAATGCGTTGTCAGATGTAAATCCTTCAGGAGCTAAGGACTGTTGA 1263 0.4861 MDKDKSLGHGGGLPPPSARYSGYSPSGTAFSVKSEPPSSSTSSYLPLAPGISTPESSAFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDEAEEDLLSMYLDMDKFNSSSATSTFQMGEPSGAVGASGSASGAPTSSAENSAVGTLERPRVRHQHSQSMDGSTTIKPELLVSGSEDLSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLSLLQRDTNGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKILTGQAMPPNGGGPMLNFASFGGGQQFYPNNHAMHTLLAAQQFQQLQIHPQKQHQFQQLQQQMLQQQQQQQQREQQHQQSSDMKMREASPTPCPPKDNALSDVNPSGAKDC 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00288 420 SMART brlzneu 215 279 IPR004827 GO:0003700|GO:0006355
Vian11g00288 420 MobiDBLite consensus disorder prediction 1 86 - -
Vian11g00288 420 FunFam probable transcription factor PosF21 218 271 - -
Vian11g00288 420 Gene3D - 218 271 - -
Vian11g00288 420 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 33 391 - -
Vian11g00288 420 Coils Coil 235 304 - -
Vian11g00288 420 MobiDBLite consensus disorder prediction 67 84 - -
Vian11g00288 420 MobiDBLite consensus disorder prediction 147 162 - -
Vian11g00288 420 SUPERFAMILY Leucine zipper domain 219 270 IPR046347 GO:0003700|GO:0006355
Vian11g00288 420 CDD bZIP_plant_RF2 220 269 IPR044759 GO:0003700|GO:0006355
Vian11g00288 420 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 217 280 IPR004827 GO:0003700|GO:0006355
Vian11g00288 420 MobiDBLite consensus disorder prediction 21 63 - -
Vian11g00288 420 Coils Coil 365 385 - -
Vian11g00288 420 Pfam bZIP transcription factor 219 277 IPR004827 GO:0003700|GO:0006355
Vian11g00288 420 MobiDBLite consensus disorder prediction 374 420 - -
Vian11g00288 420 MobiDBLite consensus disorder prediction 129 181 - -
Vian11g00288 420 MobiDBLite consensus disorder prediction 374 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00288 Vian-Chr11 2729368 2732167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00288 19 349 bZIP Transcription Factor Family AT1G06070 73.193 7.63e-170 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian11g00288 bZIP_1 2.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00288 - - gmx:100786738 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00288 11 2729368 2732167 Vian11g00288 11 2729368 2732167 ECH
Vian11g00288 11 2729368 2732167 Vian5g01421 5 36840099 36844283 PCT