Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00287 ATGGCGCCTCCTACAAAATCCGTGGAAAGCGAGGAGTGGGGAACTCCAACAAACAACCTATGGGTTGGAAATCTGCCGCCGGATGTCGCCGATTCCGATCTCATGGAACTATTCGCTCCGTACGGTTCTCTCGACGCACTCATTTCCTATTCCCCACGCACCTTCGCTTTCGTTTTGTTCGGACGCGTTGAAGAGGCCAAGGCGGCGAAAACAAATTTACAAGGCGCGTCGCTGCGCGGCTTTGAAATCAGAATCGAATTTGCAATACCGGCAAGACCGTGTAAACAGCTATGGGTGGGTGGTGTTAGCCACAACGTAGCGATGGAGGATTTGGAAGCGGAGTTTCGTAAATTCGGTAAGATTGAGGATTTCAAGTTCTTCAGAGACCGTCGTACTGCGTGTGTTGAGTTTCTCAATCTGGATGATGCTACGCGGGCCATGAAAGTCATGAACGGGAAGCGATTAGGTGGTAGCCATATTTGTGTGGACTTCCTTAGGTCACAATCTATGAATAGGGATTTTATGGTTGACCAAGGGCAGTTTCAGGCTAGACCACAGCATTTACAACCTTCAATGGGGAGGAATAGTCCACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCGTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGACATTATTCGTTTGTTGAGTTTAGAAGCATTGATGAAGCTCGCCGTGCCAAAGAGGGCCTTCAGGGACGGCTTTTTAATGATCCTAGAATAACGATTATGTATTCAAGCAGTGATACAACACCTGGCAAAGATTACCCTGGATTTTACCCTGGAAGTAAAGGGCCTTTACCCGATGGATTAATGAACGAGCTTCCATTTCGACCTCCACAATCGGATGTATTTGGTCAAAATCGTCCTATTGTTCCAAATAATTTTCCAGGGCAATTGCCACCTGGTGGTATAAGTGGACCTACTGTCTCAATGCGACCTTTTGTTCCCCAAGGTCTTGATCCTCTTAGCAATGGTCCTGATTTTAATGAGATGAGCACACTTCACAAATTTCAAGATGGTAGCTCGAAAATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCTGGTATGCTTTCTTCTCCTATGCCTGGTATTAGGCCCAGCTCCGGTCCATGGGATGTACTTGATACAAACCAATTTTCAAGAGATTCTAAACGATCAAGGATCGATGATGCTTTGCTAATTGGTGATGCTTCATTTCCTTTAAGAAATAATGATGACCGCGGATTAAGATTAGAACAACCATTTGCAATCGATCCAATTATTGATGGAGGTGGTTCTGGTCCAAAGGGTCACCTTGGTCCAGTTGGCACTAGGATCACTTCTGGAGTTCCTGGTTCTGTCCAACCTGATATTGATCATATATGGCGTGGAGTTATTGCGAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGCACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGAACTGGATTGGATATGTTAACGAAACACTATACTGATGCAATTGGCTTTGAAATTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTCCTTCATACACCGAATTCCTTCGTTACCTTAAAGCAAAAAACCGTGCTGGTGTTGCCAAGTTTATTGATAATACCACCTTATTTTTGGTACCTCCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACGGGACCTGAACGATTATACGGTGTGGTTCTTAAGTTTCCACCAGTTCCAAGTAGCACATCTATGCAACAATCAATGCATTTTCCTTCGCCCTCTACTCAGTATGTGCAACAGATTCCCCCTTCACAACCAGAGTATGGTTCAATCTCTGTAAAGGAGCAACCAATTTTACCAACGGAATATAATAGATTGTTGCACGATGATTCTAAGCATCTGCCAAAACCACTTCATCTTGCGACCAGTGTCACTCCTCCAGTTCATTCTGTTCCTCCTGGTTATTCTTCTACTTATACAGCTTCTGCATCCCAAGCGGGAGTTACATTGACCCCTGAACTTATTGCAACTTTAACCTCGTTTCTCCCTTCAACTATACAATCATCAACAGCTGGTGGCACAATGACAGTGGTTGGTCCCTCTACTATGAAGCCACCTTTTCCATCTGTTGCATCTATTGATGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAACTACGGATCCCCCTAGTTATCGTCCTCAACCGTTTGGGAGTATTAATAATGCTCAATATCATCCTTATCCACCTGCATCTTCTACTGGGCACCCTGCTCAAGTTGTCTCTGGCAGTGCACATTTCCATGATACGGCTTCAAGTCTTCAGCAGCTAGGTGCTTTTTCGTCATCTACATCCTTGACTAATTTCATTATACCTCCTCAAAATGGACAGGAAGCTGTTCCCGCTCAACTCAGTCAACATTATCAGGTGGAAGTGCCCCACAGCAATGAGAAAGGATATGGAGTAGTTCAGGGAACAGATCCCTCTGTTCTATATAGTTCTAAGGCATTCCAACAACCTAATAATCTTATTCCTTCATCCAACCAAGTTTCCAATGCTGCTTCACAGCAACACATGAATTCAGAGCCCCCAAATCAGCAACTTCAACCTGCTGGCCAGGGAATCTCTGAATTGGAGGCTGATAAGAACCAGAGGTACCACTCAACACTACAGTTTGCTGCAAACCTTCTCTTCCAAATACAGCAACAGCAAACCCAAGGAGAGCATGGACCTGGAAATCAACAATAA 2835 0.4423 MAPPTKSVESEEWGTPTNNLWVGNLPPDVADSDLMELFAPYGSLDALISYSPRTFAFVLFGRVEEAKAAKTNLQGASLRGFEIRIEFAIPARPCKQLWVGGVSHNVAMEDLEAEFRKFGKIEDFKFFRDRRTACVEFLNLDDATRAMKVMNGKRLGGSHICVDFLRSQSMNRDFMVDQGQFQARPQHLQPSMGRNSPPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMYSSSDTTPGKDYPGFYPGSKGPLPDGLMNELPFRPPQSDVFGQNRPIVPNNFPGQLPPGGISGPTVSMRPFVPQGLDPLSNGPDFNEMSTLHKFQDGSSKMGPSWKRPSPPAPGMLSSPMPGIRPSSGPWDVLDTNQFSRDSKRSRIDDALLIGDASFPLRNNDDRGLRLEQPFAIDPIIDGGGSGPKGHLGPVGTRITSGVPGSVQPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYTDAIGFEIVFFLPDSEEDFPSYTEFLRYLKAKNRAGVAKFIDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPSSTSMQQSMHFPSPSTQYVQQIPPSQPEYGSISVKEQPILPTEYNRLLHDDSKHLPKPLHLATSVTPPVHSVPPGYSSTYTASASQAGVTLTPELIATLTSFLPSTIQSSTAGGTMTVVGPSTMKPPFPSVASIDGNQSHLWKQDQQTTDPPSYRPQPFGSINNAQYHPYPPASSTGHPAQVVSGSAHFHDTASSLQQLGAFSSSTSLTNFIIPPQNGQEAVPAQLSQHYQVEVPHSNEKGYGVVQGTDPSVLYSSKAFQQPNNLIPSSNQVSNAASQQHMNSEPPNQQLQPAGQGISELEADKNQRYHSTLQFAANLLFQIQQQQTQGEHGPGNQQ 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00287 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Vian11g00287 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Vian11g00287 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Vian11g00287 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Vian11g00287 944 SMART rrm1_1 96 163 IPR000504 GO:0003723
Vian11g00287 944 SMART rrm1_1 19 86 IPR000504 GO:0003723
Vian11g00287 944 SMART rrm1_1 201 269 IPR000504 GO:0003723
Vian11g00287 944 FunFam Flowering time control protein FPA 10 92 - -
Vian11g00287 944 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 88 - -
Vian11g00287 944 CDD RRM_SF 97 163 - -
Vian11g00287 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Vian11g00287 944 SUPERFAMILY RNA-binding domain, RBD 185 275 IPR035979 GO:0003676
Vian11g00287 944 FunFam flowering time control protein FPA 194 286 - -
Vian11g00287 944 MobiDBLite consensus disorder prediction 364 405 - -
Vian11g00287 944 Gene3D - 94 192 IPR012677 -
Vian11g00287 944 CDD RRM_SF 20 86 - -
Vian11g00287 944 MobiDBLite consensus disorder prediction 870 900 - -
Vian11g00287 944 Pfam SPOC domain 477 594 IPR012921 -
Vian11g00287 944 FunFam Flowering time control protein FPA isoform A 93 193 - -
Vian11g00287 944 Gene3D - 193 279 IPR012677 -
Vian11g00287 944 CDD SPOC_FPA-like 482 602 - -
Vian11g00287 944 MobiDBLite consensus disorder prediction 739 770 - -
Vian11g00287 944 Gene3D - 2 93 IPR012677 -
Vian11g00287 944 MobiDBLite consensus disorder prediction 738 770 - -
Vian11g00287 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Vian11g00287 944 SUPERFAMILY RNA-binding domain, RBD 16 170 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00287 Vian-Chr11 2718192 2722182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00287 97 268 Eukaryotic Initiation Factors Gene Family AT4G34110 28.962 3.61e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00287 - - gmx:100806555 1476.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00287 11 2718192 2722182 Vian11g00287 11 2718192 2722182 ECH
Vian11g00287 11 2718192 2722182 Vian5g01423 5 36858003 36871411 PCT