Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00283 ATGCACTTAAGTCCTTACACTACAACTCCAAAGAAGCCATCACCACGCTCCGACAGCCACCACCACCACAACAACCACCACCACCACCACCATAGCAACAACATTGTTGATGAAGCTGCAGCGTTAGATAACAACAACATGCATCGGAGCAACCAGAGCCACACATCCACAAGTCGTTCTTCGGACTCCAGTGAGCCGAATGAAGATGGCAAATGGGCACCTAAGCTTCTGAGAGAGTGTGCAAAAGCAATATCAGAGAGAGACTCGACGAAAACGCACCATCTTTTGTGGATGCTTAACGAGCTTGCTTCGCCCTACGGTGACTGCGATCAAAAGCTCGCGTCTTACTTCTTGCAAGCCTTGTTCTGCAGAGCCACCGAGTCCGGCGAGAGATGCTACAAGACGCTCTCCTCCGTGGCGGAGAAGAACCACTCGTTCGATTCCGCGAGGAGGTTGATTCTCAAGTTTCAAGAGGTGAGCCCTTGGACCACGTTCGGACACGTGGCCTCCAACGGGGCCATCTTGGAGGCCTTGGAGGGAGAGCCCAAACTCCACATCATCGATCTCAGCAACACGCTTTGCACGCAGTGGCCTACTTTGTTGGAGGCTTTGGCCACGCGAAACGACGAAACGCCGCACCTGAAACTCACCGTGGTGGCGCTTGCGGGGTCGGTGATGAAGGAGGTTGGTCAACGGATGGAGAAGTTCGCGAGGCTTATGGGCGTGCCCTTTGAATTCAACGTGATCAGTGGCCTGAGGGATCTCACAAAAGAAGGCCTGGGCGTTCAGGAGGGCGAAGCCATCGCCGTGAACTGCGTCGGGGCGTTGAGAAGAGTGGAGGTTGAAGAGAGGGAAAACTTGATTCGCGTTTTCAAGTCTCTCGGTCCTAAAGTGGTGACCGTTGTGGAAGAAGAAGCCGATTTTTGTAGCTCCAGGGAGGATTTCGTGAAGTGCTTCGAGGAGTGTCTGAAGTTCTACTCTCTCTACTTCGAGATGCTGGAGGAGAGTTTTCCCCCGACCAGCAACGAGAGGTTGATGTTGGAGAGGGAGTGTTCGAGAAGCATAGTTAGGGTTTTGGCATGCTGTGGTGGTGGTGGTGGTGATGACATAGAAGACGAGGGAGAAGAGTTTGACTGTTGTGAGAGGAGGGAGAGAGGAACACAGTGGTGTGAGAGGCTGAGGAATGCATTTTCGCCGGTTGGTTTCAGCGATGATGTGGTCGATGATGTTAAAGCATTGCTGAAGAGATACCAACCAGGTTGGTCACTTGTAGTGTCTCAGGGTGATGATCATCTCTCAGGGATTTACTTGACATGGAAGGAGGAACCAGTGGTCTGGGCTTCAGCATGGAAACCCTAG 1359 0.5261 MHLSPYTTTPKKPSPRSDSHHHHNNHHHHHHSNNIVDEAAALDNNNMHRSNQSHTSTSRSSDSSEPNEDGKWAPKLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSARRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVALAGSVMKEVGQRMEKFARLMGVPFEFNVISGLRDLTKEGLGVQEGEAIAVNCVGALRRVEVEERENLIRVFKSLGPKVVTVVEEEADFCSSREDFVKCFEECLKFYSLYFEMLEESFPPTSNERLMLERECSRSIVRVLACCGGGGGDDIEDEGEEFDCCERRERGTQWCERLRNAFSPVGFSDDVVDDVKALLKRYQPGWSLVVSQGDDHLSGIYLTWKEEPVVWASAWKP 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00283 452 MobiDBLite consensus disorder prediction 47 63 - -
Vian11g00283 452 Pfam GRAS domain family 75 451 IPR005202 -
Vian11g00283 452 MobiDBLite consensus disorder prediction 47 72 - -
Vian11g00283 452 MobiDBLite consensus disorder prediction 1 32 - -
Vian11g00283 452 MobiDBLite consensus disorder prediction 16 30 - -
Vian11g00283 452 ProSiteProfiles GRAS family profile. 64 451 IPR005202 -
Vian11g00283 452 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 61 441 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00283 Vian-Chr11 2682536 2683894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00283 48 452 GRAS Transcription Factor Family AT4G37650 51.515 1.75e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian11g00283 GRAS 1.2e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00283 - - gmx:100818806 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00365 9 3452827 3454446 Vian11g00283 11 2682536 2683894 PCT