Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00277 ATGGAATACCCTTTTTCCTCCAAGGAAAGAGAAATTGGCGATTGGCAATCTTCCGGAACTCAGTTGGTGGGATCAACATCATTAGATAGCAGAATGAACAATTCAATATCAGAGGATATGCCCAATAGCTTCTCAGAGCTCATGAACTTTGATACTTATGCTGGTCTGTGCAACAGCCCATCCATATCTGATCAGATTTTGGCTAATGAGCTTCCGTCCTTTGCTTCATTACCATATTCATTGCCTGATGGATTCAACCTAGTCCAACAGAACAATGGGCAATGCTATATGTCAGGAGTTGGTAGAAATGACAACGATATGGAAAGCTCCCCCATTTATGGGGAGAAAGTTGTCTGTCAGCAAGTGGACACCCTTCTTGGTTTCTTAAATGATTCAAATGAAGCAAATAACTTGAATTCTAAGCTAAAAATTAATGGCTCTTCTCAACATCTGAATAACTCTGAGGCAGGAAATTATATAATGTCCAGGCCACCTGCTTTATCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGAGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGAATGGCGATCAATTCATCTTAAGCACGAGTGAACAACCTTATTTGCTAGATCAAATGCTAGCAGGGTACCGTGAAGTGTCCAGGACATTTACATTTTCTGCAGAAGGAAAATCTGGTTGTTTCCTAGGACTTCCTGGTCGTGTATTTACCTCCAAAGTTCATGAGTGGACGTCAAATGTTGGTTATTACAGTATGAATGAGTACCTAAGGTTCGAGCATGCAATTAATCACCATGTTCGTGGATCAATTGCATTTCCCATTTTTGATGTGCACTCGGAATTGTTGTGTTGTGCTGTACTGGAAATTGTCACTACAAAGGAAAAGCCAGATTTCAACAGAGAAATTGAAATTGTTTGCCGTGCACTCCAGCTTGTAAATTTAAGCACTGCCAAGCCTCTTCGATGTCTTCCCCAGTGTCTTTCAAACAACAAAAAGGCTACTTTGACTGAGATAGTTGATGTGTTACGTTCTGTCTGTCATGCACATAGATTACCACTGGCACTGACATGGCTTCCCTGTTGTTACACTGAGGGATCAAGAGGTGAAGTTACTAGGATACGAACTAAAGGGTGCCATTCAACTATTAGTGGAAAAAACATACTCTGCCTTGAAGAATCTGCTTGCTATATAACTGATAGAGCACTGGCAGGATTTGTCCGTGCATGCACAGAACATCATATTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCGATCAAATCATCCTTTCTTTTGTCCTGATGTGAAGGAATATGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGTAGTTGCAATTAGGCTAAGGAGTACTTATACTAATCATGATGATTACATATTGGAATTCTTTCTGCCTGTTAACATGAGAGGGGGTTTAGAGCAGCAACTTTTATTAGACAACCTCTCAGGTACAATGCAGAGAATTTGTAGTAGTTTGAGGACGGTGTCAGATGCTGAATTATCAAGAATAGAAAGTTCACCAGAAGGATTTGAAAAGACAAATGCCCCCTATTTTCCTCCTTTGTCATGTCAAAACTCTGGAGTACCATTAATAAATGGTGAATATCATTCTGTTCCAATGATGTCATCGACTCCAACAAAAGCAGGAGGCAATGAAATTGAGCCTTCTGCTAATCAGGGAAGATATGGAGCAAAAAGACAGGTCCAGAAAAATAAAAGTACATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAACATCGGTGTTTGCCCGACAACTCTGAAAAGGATATGTAGGCAACATGGAATTTCAAGGTGGCCATCCCGCAAGATTAATAAAGTGAATCGATCACTGAAGAAGATACAGACTGTGCTGGACTCTGTACGAGGAGTGGAGGGAGGGTTGAAGTTTGATTCCTCTATGGGGGCATTCGTGGCAAGAGGATCAATCATCCAGGAAACTGATGCACATAAAAGTCTTCTGTTTCCTGAGAAAAATATTATAAAAGACCCTGCACATATTACACAAGAAGCAGTCCCGGTACCTCGTGCACCTTGTAATGAAGTTGAGGAAGAATTGAAGAAAACCAATGCTTTTTCCGTTGGTTGTTGTGAAGATTCAAAATCAATGGCAATTGATGATGGGTCATGCGAAATGGAAAGCCTTTGCACCAAGGTGCAGGATTGTCCTGAACAAGCTTGTTTGGGCTCTGTTCTTCCAGAAGAACAGGATAAATGGACTGGGAACAAGAGTGGTTTGAGAGTAGAAAACTGTAAATGCAGTATTCTTGGTCAGAGTTCAAATTCCTTGATTGGTAAGGAGATGGACATTGGTGTAGATGGGGATGCTGAGGTTGTTGAACCTAACCACCCCAGTTCCTCAAGCTTGACAGACTCATCTAATGACTCTGGTTCAATGATGCATAGCATTTCATCAGGTTCTAAGAGCTTTAAGAACCAGAATCAGTCCAAAGTTAAGTCAACCATCGTTGATAGTGGGTCAAAACTAATTGTCAAAGCTATCTATAGAGAAGACACCATTCGTTTCAAGTTCGACCCATCTGCTGGTTGTTTCAGGTTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAACTGGGTCATTCCAACTCAAATATCTAGATGATGAAGAGGAATGGGTAATGTTGGTGAATGATGCTGATTTGCAAGAGTGTCTAGACGTATTGGATGATATTGGTACATGCAGTGTCAGGTTTCTTGTTCGTGATTTGCCTTCCATTTTAAGCAGTTCTGGCAGTAGTAATAGCTACTTGGGAGGCAGCTCATAG 2919 0.4087 MEYPFSSKEREIGDWQSSGTQLVGSTSLDSRMNNSISEDMPNSFSELMNFDTYAGLCNSPSISDQILANELPSFASLPYSLPDGFNLVQQNNGQCYMSGVGRNDNDMESSPIYGEKVVCQQVDTLLGFLNDSNEANNLNSKLKINGSSQHLNNSEAGNYIMSRPPALSLDERMLRALSFFKESAGGGILAQVWVPIKNGDQFILSTSEQPYLLDQMLAGYREVSRTFTFSAEGKSGCFLGLPGRVFTSKVHEWTSNVGYYSMNEYLRFEHAINHHVRGSIAFPIFDVHSELLCCAVLEIVTTKEKPDFNREIEIVCRALQLVNLSTAKPLRCLPQCLSNNKKATLTEIVDVLRSVCHAHRLPLALTWLPCCYTEGSRGEVTRIRTKGCHSTISGKNILCLEESACYITDRALAGFVRACTEHHIEEGKGIAGKALRSNHPFFCPDVKEYDISEYPLVHHARKYNLNAVVAIRLRSTYTNHDDYILEFFLPVNMRGGLEQQLLLDNLSGTMQRICSSLRTVSDAELSRIESSPEGFEKTNAPYFPPLSCQNSGVPLINGEYHSVPMMSSTPTKAGGNEIEPSANQGRYGAKRQVQKNKSTSEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVRGVEGGLKFDSSMGAFVARGSIIQETDAHKSLLFPEKNIIKDPAHITQEAVPVPRAPCNEVEEELKKTNAFSVGCCEDSKSMAIDDGSCEMESLCTKVQDCPEQACLGSVLPEEQDKWTGNKSGLRVENCKCSILGQSSNSLIGKEMDIGVDGDAEVVEPNHPSSSSLTDSSNDSGSMMHSISSGSKSFKNQNQSKVKSTIVDSGSKLIVKAIYREDTIRFKFDPSAGCFRLYEEVAARFKLQTGSFQLKYLDDEEEWVMLVNDADLQECLDVLDDIGTCSVRFLVRDLPSILSSSGSSNSYLGGSS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00277 972 SMART PB1_new 872 954 IPR000270 GO:0005515
Vian11g00277 972 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
Vian11g00277 972 MobiDBLite consensus disorder prediction 825 856 - -
Vian11g00277 972 Pfam RWP-RK domain 603 651 IPR003035 -
Vian11g00277 972 MobiDBLite consensus disorder prediction 11 33 - -
Vian11g00277 972 Gene3D - 869 950 - -
Vian11g00277 972 CDD PB1_NLP 873 953 IPR034891 -
Vian11g00277 972 PANTHER PROTEIN NLP8 137 964 IPR045012 GO:0003700
Vian11g00277 972 Pfam PB1 domain 875 953 IPR000270 GO:0005515
Vian11g00277 972 MobiDBLite consensus disorder prediction 1 33 - -
Vian11g00277 972 ProSiteProfiles PB1 domain profile. 872 954 IPR000270 GO:0005515
Vian11g00277 972 SUPERFAMILY CAD & PB1 domains 867 956 - -
Vian11g00277 972 MobiDBLite consensus disorder prediction 820 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00277 Vian-Chr11 2609337 2614391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00277 1 969 NLP Transcription Factor Family AT2G43500 49.085 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian11g00277 PB1 6.3e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00277 - - gmx:100804426 1499.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00277 11 2609337 2614391 Vian11g00277 11 2609337 2614391 ECH
Vian11g00277 11 2609337 2614391 Vian5g01430 5 36937610 36943874 PCT