Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00271 ATGGAAGCGCGAAGTCGCTCCGTGGAAGACATATTCGAGGATTTCAAGGGCCGACGAGCAGGCATCATCAAAGCCCTCACCACCGATGTTGAAGATTTCTACAGTCAATGTGATCCTGTACATGTACTGAAATTAGCTCGATATTCGAGCATGACTGTTTTTCTTGGTCTAGTGTTTGATTTTCACCGTACCCATCTTGAGGCTCTTGCTATAAAGGGAAGTCAATTCAATATGGAGAAGGAGAATCTGTGCTTATATGGATTACCCAGTGAGCAGTGGGAAGTAAATTTACCTGTAGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTGCTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAACTACCAACAATATTTGAAGTTGTTACTGGTGGTGGAGCAAAGAAGCCAGTTAAAGAGAAGTCTTCAGTTTCGAACAACAATGGAAACAAATCTAAGTCTAACTCTAAAGTGCGGGTTCCCGAAACCCAGGGCAGACAGTCAAAGGCCTTGTTACAACCAAAAGATGAGGATGAAGGACTAGAAGAGCAAGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGCACTGATGAGTTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGCAAATGCGTGAAGATAACCCCTGCTAGGGCAGAGCACATCAAGCAATACAAGTGTCCATCGTGCAGTAACAAGAGAGCTCGCTAA 870 0.4414 MEARSRSVEDIFEDFKGRRAGIIKALTTDVEDFYSQCDPVHVLKLARYSSMTVFLGLVFDFHRTHLEALAIKGSQFNMEKENLCLYGLPSEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVTGGGAKKPVKEKSSVSNNNGNKSKSNSKVRVPETQGRQSKALLQPKDEDEGLEEQDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00271 289 Pfam PHD-finger 237 286 IPR019787 -
Vian11g00271 289 MobiDBLite consensus disorder prediction 178 230 - -
Vian11g00271 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 285 IPR013083 -
Vian11g00271 289 ProSiteProfiles Zinc finger PHD-type profile. 234 286 IPR019787 -
Vian11g00271 289 SMART PHD_3 236 284 IPR001965 -
Vian11g00271 289 CDD PHD_AL_plant 236 286 IPR044104 -
Vian11g00271 289 ProSitePatterns Zinc finger PHD-type signature. 237 283 IPR019786 -
Vian11g00271 289 MobiDBLite consensus disorder prediction 183 213 - -
Vian11g00271 289 Pfam Alfin 76 174 IPR021998 GO:0006355|GO:0042393
Vian11g00271 289 Pfam Alfin 7 40 IPR021998 GO:0006355|GO:0042393
Vian11g00271 289 PANTHER CPG BINDING PROTEIN 5 289 IPR045104 GO:0006355|GO:0042393
Vian11g00271 289 SUPERFAMILY FYVE/PHD zinc finger 226 287 IPR011011 -
Vian11g00271 289 FunFam PHD finger alfin-like protein 229 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00271 Vian-Chr11 2568001 2571815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00271 6 289 Alfin-like Transcription Factor Family AT3G42790 64.085 7.86e-115 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vian11g00271 Alfin 2.9e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00271 K26274 - gmx:100170696 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00320 9 3020336 3024485 Vian11g00271 11 2568001 2571815 ECH
Vian11g00271 11 2568001 2571815 Vian11g00271 11 2568001 2571815 ECH
Vian11g00271 11 2568001 2571815 Vian9g00320 9 3020336 3024485 PCT