Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00249 ATGGAGTATTTTCCTTCTCAACATGCCTTGCAATTCGAATCTGAACCTGGCGCCTACAATGGTGATGCGAATGATGAGCTCGCAAAACCCTCCCCCAATCCTCGTGATTCGTCTTCAGGGAAACTTTTCGTTGGGGGCATTTCGTGGGAGACTTCTCAAGAATCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACAGATTCGGTAATAATGACAAATAAACTTTCTGGAAGGCCACGCGGCTTTGGCTTTGTAACATTTGCCGATTCAGCTGTAGCAGATGAAGTTTTGGCCCAGGAACATACCATTGATGGCAGAGTGGTTGAAGTGAAGAGGACAGTCCCTAGGGAGGACATGGAAGGAATTGGAGTACTAAAAACAAAGAAGATATTTGTAGGGGGAATACCCCAACTTTTCACTGACGATGAGTTGAGGGGATACTTTTCACCTTATGGCGATGTTGTTGAGTGCCAAATCATGTTAGATCACAATACTGGGCGATCTAGAGGCTTTGGATTTGTAACTTTTGACAACGAAGATTCAGTCGAAAAGGTGTTTTCAGCGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAAATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATCACATCAGTAGTACCTCACGAAAATCATATGGTGGTTTTAGCAATGGAATGGATGGATATGGTGGGAATAGCTCAAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACAGATTCTGGAATGAACGGTGCATATGGCTACTTTGAGGGAAGCTTTGGCGGAAGTGCTGCTACTGTTTATGGTGGTTATTGTGGATATGGTTATGGTTTTGGATATGGTGGACCGATGTATTGCTATGGCGGCTATGGACTGAATTCTTATGGTAATCCTGGGGTTTATGGTGGCGGCACTATCTCCCATGGAGATGGTAATGCATATGGAAGAAACGTTAGTTTCAACCGCAGCAGTGGATATGATGGTGGGAAAGGGGCTGAGAAGGACGATGGTCCTACAACTGGAAGGTACCATCCTTACTGGAAATGA 1065 0.4366 MEYFPSQHALQFESEPGAYNGDANDELAKPSPNPRDSSSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSAVADEVLAQEHTIDGRVVEVKRTVPREDMEGIGVLKTKKIFVGGIPQLFTDDELRGYFSPYGDVVECQIMLDHNTGRSRGFGFVTFDNEDSVEKVFSAGKIHEIGGKQVEIKRAEPKRSGVDHISSTSRKSYGGFSNGMDGYGGNSSRNRNHGKRGGQYTDSGMNGAYGYFEGSFGGSAATVYGGYCGYGYGFGYGGPMYCYGGYGLNSYGNPGVYGGGTISHGDGNAYGRNVSFNRSSGYDGGKGAEKDDGPTTGRYHPYWK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00249 354 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 20 353 - -
Vian11g00249 354 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 121 257 - -
Vian11g00249 354 Gene3D - 38 121 IPR012677 -
Vian11g00249 354 Gene3D - 125 265 IPR012677 -
Vian11g00249 354 SMART rrm1_1 41 112 IPR000504 GO:0003723
Vian11g00249 354 SMART rrm1_1 130 203 IPR000504 GO:0003723
Vian11g00249 354 MobiDBLite consensus disorder prediction 331 354 - -
Vian11g00249 354 MobiDBLite consensus disorder prediction 216 249 - -
Vian11g00249 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 116 IPR000504 GO:0003723
Vian11g00249 354 FunFam Heterogeneous nuclear ribonucleoprotein 1 39 120 - -
Vian11g00249 354 SUPERFAMILY RNA-binding domain, RBD 30 120 IPR035979 GO:0003676
Vian11g00249 354 CDD RRM1_hnRNPA_hnRNPD_like 42 112 - -
Vian11g00249 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Vian11g00249 354 MobiDBLite consensus disorder prediction 202 249 - -
Vian11g00249 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 109 IPR000504 GO:0003723
Vian11g00249 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Vian11g00249 354 SUPERFAMILY RNA-binding domain, RBD 127 236 IPR035979 GO:0003676
Vian11g00249 354 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00249 Vian-Chr11 2414128 2416935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00249 42 227 Eukaryotic Initiation Factors Gene Family AT1G71770 27.317 1.17e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00249 K12741 - gmx:100818080 572.778