Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00244 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCTTCTTCAGGCAATAGAACCGAAATTGGTTCTGATTACTCGCAGCAATACTTTGCTAGCCCACCAACTCAAACGCAGGCTCCAACAAAGAAAAAGAGAAACCTTCCAGGCAACCCAGACCCGGAGGCTGAAGTTGTGGCGTTGTCTCCAAAGACTCTCTTGGCCACAAACAGGTTCGTCTGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTCCAACTTCACAGAAGAGGGCACAACTTGCCATGGAAGCTGAAGCAGAGAACGAGCAAGGAGATAAGGAAGAAGGTTTATGTCTGCCCAGAAGCAAGTTGCGTCCACCACGACCCTTCAAGGGCCCTGGGGGACCTAACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCAAAAACCTGTGGCACAAGAGAGTACAGATGTGACTGCGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCTGTGACAGGCATGGACATTGGCATTGGCATTCCCAGCAACTCAGCTACAACGTCAACAACACCTCACAAAGCACCTGCAGCAGGAGTAGTGATCCCTTCATCCTCTCATCATCATCATCATCATCATCATCATGAAGACATCCATGGTAACAATTTCCCATTGAAGAAAGACCAACAAGGTTTCATGCCCCCTTGGCTTGGACAACCACCCTCCACCATTGATCTCTCCTCCTCCTCCTCCTCATTCTTCTCTCAGCAGGATCATGTGAGCAGTCTCCATGAAAACCCTAACCCTAGAGGTGGTGGTGGTGGAGGTGGTCCCACTCTCCCTCCCTACCCAACAGCACCTTCCCCTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGCAGCCCAAATGGGAGCTACCATGAGCAAAACTGGCTCCATGATTAGGACCCACCAACAGGCTCACGTGTCTGCTGACTCTTTGAATTTGTCCTCACGTGACGACCAGATGACCCCCACTTCCAACACCACCACTCCCCATGGCTTGGTACCTTTCGGGAATAAAGCTGTTCCTGGTATTGGTGTTGGTGTTGGTGTTTCTTCATCACTCCTTCACCATGTTATTAACTCTTTCTCTTCCCCTTTTGAAGGGACTTCTTTTGAGGACCCTTTCAATGGTGCTGTGACGAAAACAACCGCCGCTGATGACCGTGCCGGTGGCGGCGGCGGCGGCGGAGGAGGAGGAAATTATAATGAGGCCATGACCAGAGATTTCTTGGGTCTTAGACCCCTCTCTCACACTGATATTCTCAACATTGCTGGCATGGGAAACTGCATGAACTCCCAACATAACCAAACCCAAAACCCTTGGCAAGGTTAG 1482 0.4993 MSNLTSASGEASASSGNRTEIGSDYSQQYFASPPTQTQAPTKKKRNLPGNPDPEAEVVALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGMDIGIGIPSNSATTSTTPHKAPAAGVVIPSSSHHHHHHHHHEDIHGNNFPLKKDQQGFMPPWLGQPPSTIDLSSSSSSFFSQQDHVSSLHENPNPRGGGGGGGPTLPPYPTAPSPPHMSATALLQKAAQMGATMSKTGSMIRTHQQAHVSADSLNLSSRDDQMTPTSNTTTPHGLVPFGNKAVPGIGVGVGVSSSLLHHVINSFSSPFEGTSFEDPFNGAVTKTTAADDRAGGGGGGGGGGNYNEAMTRDFLGLRPLSHTDILNIAGMGNCMNSQHNQTQNPWQG 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00244 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Vian11g00244 493 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Vian11g00244 493 Gene3D Classic Zinc Finger 125 205 - -
Vian11g00244 493 MobiDBLite consensus disorder prediction 1 54 - -
Vian11g00244 493 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Vian11g00244 493 SMART c2h2final6 71 93 IPR013087 -
Vian11g00244 493 SMART c2h2final6 112 142 IPR013087 -
Vian11g00244 493 SMART c2h2final6 147 167 IPR013087 -
Vian11g00244 493 FunFam protein indeterminate-domain 12-like 50 118 - -
Vian11g00244 493 MobiDBLite consensus disorder prediction 1 44 - -
Vian11g00244 493 MobiDBLite consensus disorder prediction 237 384 - -
Vian11g00244 493 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Vian11g00244 493 MobiDBLite consensus disorder prediction 334 383 - -
Vian11g00244 493 MobiDBLite consensus disorder prediction 275 298 - -
Vian11g00244 493 Gene3D Classic Zinc Finger 50 121 - -
Vian11g00244 493 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Vian11g00244 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 482 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00244 Vian-Chr11 2380340 2382480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00244 1 482 IDZ Gene Family AT1G55110 47.117 1.99e-126 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g00244 zf-C2H2 0.0049 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00244 K25870 - gmx:100820609 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00244 11 2380340 2382480 Vian9g00267 9 2403373 2405535 PCT