Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00228 ATGGAGGAAATGTCTAAGTTCCTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTTTTTCCCCTTCAATTGTGTACATAGAAAAGGAAAGCCTGCATATGTATCCATTAGGATAGGCAAACAGAAGGTGGCGAAAACGACACAAGAACGTGAACGTGTGTGGAACCAAACCTTTCAGATTCTGTGTGCTCATCCAGAAGATTCAACTATCACCATTACACTGAAGACATCATGCTTCGTTTTGGGAAAATTCCACATGCAGGCCAAGCGGTTGAAGGAAGAGAGTTTGATCAATGGATTGTTCCCTCTTCTCATGGAAAATGGAAAACCAAATCCACAACTGAAGTTAAGATTTATGTTGTGGTTCAAGCCAGCAGAAATGGAACCAAGTTGGAGAAAGATACTAAGCAATGGGGAGTTTCAAGGGCTTAGGGATGCTACTTTCCCACAAAGGTCCAACTGCGAGGTTAAACTCTATCATGATGCTCACCATTCATCTACCTTCCACCCTCCTTTTGACCTTTGTGGCGCTCCATTAAAGCTATGGGAAGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTGATTTATATTGCAGGCTGGTCTTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCTCATGCTAGGGAGATAAATCTGGGTGAGCTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGACGAAACATCTTTGCCTTTGATTAAGAACAAAGGTGTGATGAACACTCATGACGAGGAAGCTTTTGCCTACTTCAAACACACTAAAGTAATATGCAGAAAGTGTCCCAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACTATGGACACCAGAACACCCTACTCTGTTCATGCCAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGGTGGCCGCTATGACACAGAAAAACACTCATTGTTTCAGACACTTGCTGAGGAATCCGATTACCATGACTTCTACCAGACAAACATTGCAAAAGCTAGCCTCAATAAAGGAGGACCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCATGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGCGATCCTTCTCTTCTAGTTCCTGCCAACACTCTACAAAATCTCATTCCCACATACTCGAGCACTCCAACAGAAAGGAATTGGAAAGTCCAAGTATACAGGTCAATTGACCATGTATCTGCTAGCCAGTTGTTTAGAAGGCTAACTGTGGAGAGAAGCATCCATGAAGCTTATGTTGAAGCTATTAGGCGTGCTGATAGGTTTGTATTCATTGAAAACCAGTATTTTGTTGGAGGGTGTCACTTGTGGCAAGAAGATAGGCACAGTGGATGCAGCAATCTGATTCCTGTTGAGATTGCACTGAAGGTGGTTAGTAAGATCAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTTCACTGGACCAGAGAAACAATGACAATGATGTATTGGTTGATTGGAGAAGCAATAACAGAAAGTGGGGAGCCAGGGCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAACAGGGAAAAGAAGGAAAAGGAGGAGTTTCTTCCTCCACTTTCTCCCCATCCTGCAACACAATACTGGAATGCACAGAAGAACAGAAGGTTCCCGATTTATGTTCATTCAAAGGTGATGATAGTGGACGACATTTACATATTAATAGGATCAGCCAATGTGAACCAACGATCCATGGATGGACAAAGGGACACTGAGATTGCCATTGGGGCATACCAGTTTCAAGATGGAGTTGATCACCACGTAAACCGTGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAGCACACGGGAAGTGCTGAGGAACTGTTCTTAGAGCCAGAAAGTTTGGCATGTGTGCAGAGAATGAGGTCAATAGGGGATCATATGTGGGAAATGTACAGCAGTGAAGAAATTGTAGACATGGAAGGTGTGCACCTTGTAAGGTACCCTGTGAAAATAACTCAAGAAGGGTATGTGGAGGACCCAGATGATGGCGGTGATCATTTTCCTGATACAAAATCTCCTCAGTTTAGGATCTGCGTTGATTCAGGATTCTTTGTGAAACTGAAAACGGGTTCCTGCATTCAAGGGATAATTCTGTTGAATGAAGAAGCTGAAGTCAATTTCATGGTGTAG 2340 0.4308 MEEMSKFLIHGTIEATIFNATPYSPFFPFNCVHRKGKPAYVSIRIGKQKVAKTTQERERVWNQTFQILCAHPEDSTITITLKTSCFVLGKFHMQAKRLKEESLINGLFPLLMENGKPNPQLKLRFMLWFKPAEMEPSWRKILSNGEFQGLRDATFPQRSNCEVKLYHDAHHSSTFHPPFDLCGAPLKLWEDVYKAIEGAKYLIYIAGWSFNPKMVLVRDPQTEIPHAREINLGELLKKKAEEGVAVRVMIWDDETSLPLIKNKGVMNTHDEEAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITMDTRTPYSVHAREIMSFLGGLDLCGGRYDTEKHSLFQTLAEESDYHDFYQTNIAKASLNKGGPREPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSLLVPANTLQNLIPTYSSTPTERNWKVQVYRSIDHVSASQLFRRLTVERSIHEAYVEAIRRADRFVFIENQYFVGGCHLWQEDRHSGCSNLIPVEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYWLIGEAITESGEPGHPRDYLNFFCLANREKKEKEEFLPPLSPHPATQYWNAQKNRRFPIYVHSKVMIVDDIYILIGSANVNQRSMDGQRDTEIAIGAYQFQDGVDHHVNRGDIHAYRMSLWYEHTGSAEELFLEPESLACVQRMRSIGDHMWEMYSSEEIVDMEGVHLVRYPVKITQEGYVEDPDDGGDHFPDTKSPQFRICVDSGFFVKLKTGSCIQGIILLNEEAEVNFMV 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00228 779 Gene3D Endonuclease Chain A 445 657 - -
Vian11g00228 779 SUPERFAMILY Phospholipase D/nuclease 147 432 - -
Vian11g00228 779 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Vian11g00228 779 SUPERFAMILY Phospholipase D/nuclease 424 687 - -
Vian11g00228 779 SMART pld_4 296 333 IPR001736 GO:0003824
Vian11g00228 779 SMART pld_4 603 630 IPR001736 GO:0003824
Vian11g00228 779 PIRSF PLD_plant 2 750 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vian11g00228 779 PANTHER PHOSPHOLIPASE D 8 739 IPR015679 -
Vian11g00228 779 Pfam Phospholipase D C terminal 675 742 IPR024632 -
Vian11g00228 779 Pfam C2 domain 39 110 IPR000008 -
Vian11g00228 779 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 39 132 IPR035892 -
Vian11g00228 779 Gene3D Endonuclease Chain A 183 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00228 Vian-Chr11 2227354 2231262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00228 31 742 Phospholipase D Gene Family (Wang group) AT1G55180 62.277 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00228 K01115 - gmx:100807431 1379.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00228 11 2227354 2231262 Vian11g00228 11 2227354 2231262 ECH