Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00218 ATGACAACAGTGCCAGGACAATTGATTTGGGAGATCGTGAAGAAGAACAACTCTTTCTTGGTAAAAGAGTTCGGAAGGGGCACTCAGAGCGTGCAGTTCAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCTGGTTTGGCGAACAAGAAAACCGTCACTATTCAGCCTGCTGGTAAAGACCAATCTGTAATACTGGCCACAACTAAAACAAGGAAACAAAATAAGCCTGCTTCTTTGCTTCACAAGTCTGTCATGAAAAAGGAGTTCCGAAGAATGGCGAAGGCAGTGCAAAATCAGGTAGCGGATAACTACTACAGACCTGATCTGAAAAAGGCAGCTCTGGCAAGGTTGAGCGCTGTCGATAGGAGTCTGAAAGTTGCAAAGTCTGGAGTTAAGAAGAGAAACAGACAGGCTGTGAAGGTTGCTGGCAGGAAGTGA 453 0.4547 MTTVPGQLIWEIVKKNNSFLVKEFGRGTQSVQFSREPNNLYNLNTFKYSGLANKKTVTIQPAGKDQSVILATTKTRKQNKPASLLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVDRSLKVAKSGVKKRNRQAVKVAGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00218 150 Gene3D - 6 134 - -
Vian11g00218 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Vian11g00218 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Vian11g00218 150 FunFam 60S ribosomal protein L28 5 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00218 Vian-Chr11 2148254 2150184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00218 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.727 7.75e-76 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00218 K02903 - gmx:100500189 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00218 11 2148254 2150184 Vian11g00218 11 2148254 2150184 ECH