Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00214 ATGCTTTCCCCATCTTCTGTTCGTGGTTATCAACAATTTCAAACAGAGGTTAAACTTCTTATGAGAGTTCATCACAAAAATTTGACCTCCCTTGTTGGTTACTGTAATGAAGGAACCAATAAGGGTCTCATTTACGAGTACATGGCTAACGGAAACTTACAAGAACATCTCTCTGGTAAACGAAGCAAAAGAAATTTCTTCAGCTGGGAAAAGAGACTTCGTATAGCAGTGGATGCAGCCTCAGGATTGGAGTATCTGCAAAATGGTTGTAAGCCACCAATATTCCACAGAGACATAAAAGCTACAAACATCTTGTTGAATGAACAACTCCAAGCAAAATTATCTGATTTTGGTCTATCCAAAATTATCCTAACTGATGGGGAAACTCATGTTTCAACTGTTATTGCTGGTACTCCTGGTTATCTAGACCCTGAATACTACCTAACCAATAGATTAACAGAGAAGAGCGACGTTTATAGCTTTGGTGTTGTGCTTTTAGAGATAATCACAAGTCAACCAGTGATAGCGAAGAATCAAGAAAAAACCCACATAAGTGAATGGGTTAGGTCCTTGATTGCAAAAGGTGATATCGATGCCGTTGTTGACTCAAGGTTGGAAGGAGATTTTGACAGTAACTCAGTTTGGAAAGCTGTAGAAATAGCAACGGCATGTGTATCTCCAAATCCCAACAGAAGGCCAATCATAAGTGTGGTGGTGAATGAACTGAAGGAGTCTTTAGCAATGGAATTAGCTCGAACTGAAGATAGAAGCACCAATACAAGTTATTCAGTTAAACAGGTCATCAGGAATCTGAATACAGAATCTCTTCCCCAGGCCAGATAA 843 0.3938 MLSPSSVRGYQQFQTEVKLLMRVHHKNLTSLVGYCNEGTNKGLIYEYMANGNLQEHLSGKRSKRNFFSWEKRLRIAVDAASGLEYLQNGCKPPIFHRDIKATNILLNEQLQAKLSDFGLSKIILTDGETHVSTVIAGTPGYLDPEYYLTNRLTEKSDVYSFGVVLLEIITSQPVIAKNQEKTHISEWVRSLIAKGDIDAVVDSRLEGDFDSNSVWKAVEIATACVSPNPNRRPIISVVVNELKESLAMELARTEDRSTNTSYSVKQVIRNLNTESLPQAR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00214 280 SUPERFAMILY Protein kinase-like (PK-like) 8 242 IPR011009 -
Vian11g00214 280 Pfam Protein tyrosine and serine/threonine kinase 10 242 IPR001245 GO:0004672|GO:0006468
Vian11g00214 280 Gene3D Phosphorylase Kinase; domain 1 1 48 - -
Vian11g00214 280 PIRSF ILK 3 260 - -
Vian11g00214 280 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00214 280 SMART serkin_6 1 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00214 280 Gene3D Transferase(Phosphotransferase) domain 1 49 270 - -
Vian11g00214 280 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 48 255 - -
Vian11g00214 280 ProSitePatterns Serine/Threonine protein kinases active-site signature. 94 106 IPR008271 GO:0004672|GO:0006468
Vian11g00214 280 PANTHER OS07G0107800 PROTEIN-RELATED 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00214 Vian-Chr11 2097947 2099215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00214 1 280 Receptor kinase-like Gene Family AT1G51880 59.643 4.33e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vian11g00214 PK_Tyr_Ser-Thr 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00214 - - pvu:PHAVU_005G162300g 500.745