Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00209 ATGTGGATGAGTTTCTATGTTGCTGTTTTAGCTGTTCTACTTATTCAAGCTCATGCTCAACCAGGATTCATCAGCATAAATTGCGGATCTCAAGATGGTTATACTGACCAGTCATTACAAATAAATTACGTTTCGGATGCTGATTTCATAAATACTGGTGTGAATGGGAAAATATCATCTGAAGAGAACAGCAGACACAATACTCAACGACAACTATGGACGCTGAGAAGCTTCCCCGAAGGAAAAAGGAACTGCTACAAAATAAACGTCACAAGAGCCTCTAAGTATCTCATCCGCACTACTTTTCTCTACGGAAATTATGATGGCCAAAATAATACACCACAGTTTGATCTTCTTATAGGACCTAACCACTGGGGTACAGTCACTATACAAAATGAATCAATTACCCAAACCAATGAGATCATTCATGTACCTTCAATGGATTATGTGCAAATCTGTCTGGTTGACACAGACAGTGGCATACCATTTATAACAGCCATAGAATTCAGGACTTTGAAAAATGATACATACGTCACACCATTCGGATCATTGGAACTTTACAATTACCTGCGCTGCGATTTGGGTTCAAACACAAGCTACAGGCACCCGTTTGATGTTTATGATCGTGTCTGGTATGGTCCCTATTACCCCTGTAACTTCGGCAAAAATTGGAAACCACTAAGTGCCTCCATTTCTGATGATTCTTTAAATCAGACGGATTACAAGCAGGGAGCTACTATCATGAGCACCGCAGTTGAACCAGAAAATGATAGTTCTCCGTTGGTAATAAGCTGGGAGCCACAAAAAGAAACTGACAAATTCTATGTGTACATGTACTTCACGGAAATTCATCTGTTAACCACGAATGAGACAAGAATATTCAACATCATGCTGAACGATGAATCATTAGTTCAAAATTTTTCTCCGCGGTACCATATTGCCCATACCATAAATCCGACGGCAGCCATCAGTGGGAAAGAAATTAAATTTTCCCTCGAAAGAACTGGAAATTCAACCCTCCCTCCCATCATCAGTGCCATTGAAATTTACAGAGTAATAGACTCACAGAACCCAGAAACATTCCAAGGAGATGTTGATGCAATTACGAGCATTAAGTCTGCCTATGGAATGGAAAGGGATTGGGAAGGTGATCCATGCTCTCCTGCAGCCTACTTGTGGGATGGTCTCAACTGTACTTATCTCGGCAATGAGTTCCCAAGAATCACAGCTTTGAATTTATCTTCGAGTGGATTGTCAGGAAAGATTGACTCTTCTATCTCAAACCTCACCATGTTGGAGAAGCTGGATTTATCTAACAATAACTTAAATGGTGATGTTCCTGATTTTCTGTCTCAATTACAACACTTGAAGATCTTAAACTTGGAGAAGAATGACCTCTCCGGTTCAATTCCCTCTGCACTTGTTGAAAAATCACGCAAAGGTTCTCTTTCACTAAGTGTGGGTGAAAATCCATATCTATGTGAATCTGGTCAATGCAACGAGAAGGAAAAGAAAAATACTGTCATACTCATAGTGGCATCAATATGTGGGGTTCTAATTCTTCTAATAGCCGTTGCTATATTGTGGATCATTAAAAGGAAAAAATCAAAAGTCGAAAAATTTACAGATTCGGTGGCACTAAATCATCAGAGTGATTTTTCAGAGAAATCCACAGAAAAGGATAATTCGTTCCAACAAGGCAAAAGTCAAATGTATTCATACTATGATGTCCTTTATATCACTAACAATTTCAAAAGAATTATTGGTAAAGGAGGATTTGGAACAGTTTACCTGGGTTTTATCGATGACACTCCAGTTGCAGTGAAAATGCTTTCCTCATCAGCAGTTCACGGTTATCAACAATTTCAAGCAGAGGTTAAACTTCTACTCAGAGTTCATCACAAAAATCTGACATCCCTTATTGGGTACTGTAACGAAGGAACCAATAAGGGCCTTATATATGAATACATGGCTAATGGGAACTTACATGAACATCTCTCAGGTAAATATAGCGAATCACCATTATTGAGCTGGAAGGACAGACTTCGTGTAGCACTGGATGCAGCCTTAGGATTGGAATATCTGCAAACTGGTTGCAAGCCTCCTATAATCCACAGAGATGTGAAATCTACAAATATCTTGTTGGACGAACACTTCCAAGCAAAGTTATCTGATTTCGGTTTATCCAAAGTTGTCCCAGATGATGGGGGGTCTTATGTGTCAACTGTTGTTGCTGGCACTTTCGGTTACCTGGACCCTCACTACCACTCTTCCAATAGGTTAACACAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATAATCACAAATCAACCAGTAATGGCAGGGAATGAAGAAACGGGTCACATAAGTGAACGAGTTAACTTGATGATATCAAAAGGGGATATCAGGGCCATAGTTGACTCAAGCTTAGAAGGAAATTTTGACATAAACTCGGCATGGAAAGCCGTAGAAATAGCAATGGCTTGTGTTTCTCCAAATCCAAACGAAAGGCCAATGATGAGTGCGGTAGTGATTGAACTACAGGAGGCTTTAGCGACCGAATTAGCTAGAACAAACCATGACAGTGGTGCTTCTATTGCATCGATCAGCGTGAAAGTAGACACCGGATATATGCCCTTAGCCAGGTAA 2661 0.3987 MWMSFYVAVLAVLLIQAHAQPGFISINCGSQDGYTDQSLQINYVSDADFINTGVNGKISSEENSRHNTQRQLWTLRSFPEGKRNCYKINVTRASKYLIRTTFLYGNYDGQNNTPQFDLLIGPNHWGTVTIQNESITQTNEIIHVPSMDYVQICLVDTDSGIPFITAIEFRTLKNDTYVTPFGSLELYNYLRCDLGSNTSYRHPFDVYDRVWYGPYYPCNFGKNWKPLSASISDDSLNQTDYKQGATIMSTAVEPENDSSPLVISWEPQKETDKFYVYMYFTEIHLLTTNETRIFNIMLNDESLVQNFSPRYHIAHTINPTAAISGKEIKFSLERTGNSTLPPIISAIEIYRVIDSQNPETFQGDVDAITSIKSAYGMERDWEGDPCSPAAYLWDGLNCTYLGNEFPRITALNLSSSGLSGKIDSSISNLTMLEKLDLSNNNLNGDVPDFLSQLQHLKILNLEKNDLSGSIPSALVEKSRKGSLSLSVGENPYLCESGQCNEKEKKNTVILIVASICGVLILLIAVAILWIIKRKKSKVEKFTDSVALNHQSDFSEKSTEKDNSFQQGKSQMYSYYDVLYITNNFKRIIGKGGFGTVYLGFIDDTPVAVKMLSSSAVHGYQQFQAEVKLLLRVHHKNLTSLIGYCNEGTNKGLIYEYMANGNLHEHLSGKYSESPLLSWKDRLRVALDAALGLEYLQTGCKPPIIHRDVKSTNILLDEHFQAKLSDFGLSKVVPDDGGSYVSTVVAGTFGYLDPHYHSSNRLTQKSDVYSFGVVLLEIITNQPVMAGNEETGHISERVNLMISKGDIRAIVDSSLEGNFDINSAWKAVEIAMACVSPNPNERPMMSAVVIELQEALATELARTNHDSGASIASISVKVDTGYMPLAR 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00209 886 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 657 864 - -
Vian11g00209 886 Pfam Protein tyrosine and serine/threonine kinase 584 850 IPR001245 GO:0004672|GO:0006468
Vian11g00209 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Vian11g00209 886 ProSitePatterns Protein kinases ATP-binding region signature. 588 609 IPR017441 GO:0005524
Vian11g00209 886 Pfam Leucine rich repeat 406 466 IPR001611 GO:0005515
Vian11g00209 886 Gene3D Phosphorylase Kinase; domain 1 553 656 - -
Vian11g00209 886 FunFam Leucine-rich repeat receptor-like protein kinase 556 656 - -
Vian11g00209 886 CDD STKc_IRAK 588 853 - -
Vian11g00209 886 Pfam Malectin-like domain 26 352 IPR024788 -
Vian11g00209 886 ProSiteProfiles Leucine-rich repeat profile. 431 453 IPR001611 GO:0005515
Vian11g00209 886 Gene3D Ribonuclease Inhibitor 365 485 IPR032675 -
Vian11g00209 886 Gene3D Transferase(Phosphotransferase) domain 1 657 875 - -
Vian11g00209 886 PANTHER OS07G0107800 PROTEIN-RELATED 24 855 - -
Vian11g00209 886 SUPERFAMILY L domain-like 391 476 - -
Vian11g00209 886 ProSiteProfiles Protein kinase domain profile. 582 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00209 886 SMART serkin_6 582 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00209 886 FunFam Leucine-rich repeat receptor-like kinase 363 496 - -
Vian11g00209 886 SUPERFAMILY Protein kinase-like (PK-like) 563 850 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00209 Vian-Chr11 1927435 1932229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00209 11 861 Receptor kinase-like Gene Family AT1G51800 49.137 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vian11g00209 Malectin_like 4e-103 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00209 - - vum:124830965 1489.55