Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00201 ATGGATGAAAGGTCAAGAAACGAGGTATCTCCTCAGCTGTTAGATTTGATCCCAAACGAGCGAGAGTGGCAGATGAACAGAAACGAAGGAAAGTCCTCAGAGGAGAGAAAGCTCGAACTGAGGCTAGGTCCACCTGGTGAGGACTGGACTCTCGGTGGTAAAATGAAGAACGCCAACTCAGAAAGAGAGGAGTCACTTCTCTCTCTTGGGTGCTTCCCTTCTTCCAACATGTCTCATGCAATACTCAGCCCCAACAATGGGTTCCAAAGCAAGGCTTCTCCATGGCCAAACTACCACAACAAGAGTAACAACAAAGCCTCTGCACCTTTTCTTCAGTTCCCATCAGCTGCACCCGTGATGGGAAAAGATGCTTCACAAAACTGCTGCCCTAAGGTGGTAGAGTTGCAGAATGGTTGTGGTGGTGGTGATAGCAAAGTGTTCTCTCCCTCTCCTGCAAATACAGCTGTGTCACAGCCCAACACCTCTCAGAAAAGAACTGCTCCCGCTCCGGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCTAGCAGCAGCGCTTCTAAGCCATCAACTGAATCACAGCCTGAGCAGCACAACAAGGTCGCTGGTAAAAAACCTGTTGATAACTATGCCGGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTATGACAGCTATGAAAATCTCTCTTCTGCTGTGGACGAGCTTTTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGATGAAGAGAAAGCAATCACGGGTTTATTGGATGGGAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTGAGAGTGTTAAAGAGTTCAGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAAGAGAAGATATCTCTTGACTCAGCAATGAAATAA 1032 0.4719 MDERSRNEVSPQLLDLIPNEREWQMNRNEGKSSEERKLELRLGPPGEDWTLGGKMKNANSEREESLLSLGCFPSSNMSHAILSPNNGFQSKASPWPNYHNKSNNKASAPFLQFPSAAPVMGKDASQNCCPKVVELQNGCGGGDSKVFSPSPANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKPSTESQPEQHNKVAGKKPVDNYAGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQEKISLDSAMK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00201 343 Coils Coil 338 343 - -
Vian11g00201 343 Gene3D - 212 332 - -
Vian11g00201 343 FunFam Auxin-responsive protein 212 333 - -
Vian11g00201 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 324 IPR003311 GO:0005634|GO:0006355
Vian11g00201 343 SUPERFAMILY CAD & PB1 domains 209 318 - -
Vian11g00201 343 ProSiteProfiles PB1 domain profile. 217 321 IPR000270 GO:0005515
Vian11g00201 343 MobiDBLite consensus disorder prediction 181 200 - -
Vian11g00201 343 MobiDBLite consensus disorder prediction 147 167 - -
Vian11g00201 343 MobiDBLite consensus disorder prediction 22 43 - -
Vian11g00201 343 MobiDBLite consensus disorder prediction 144 209 - -
Vian11g00201 343 Pfam AUX/IAA family 38 326 IPR033389 -
Vian11g00201 343 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00201 Vian-Chr11 1843960 1846508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00201 220 332 B3 DNA Binding Superfamily AT4G23980 33.628 7.87e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian11g00201 AUX_IAA 8.4e-73 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00201 K14484 - gmx:100804593 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00201 9 1655200 1657258 Vian11g00201 11 1843960 1846508 ECH
Vian11g00201 11 1843960 1846508 Vian11g00201 11 1843960 1846508 ECH
Vian11g00201 11 1843960 1846508 Vian9g00201 9 1655200 1657258 PCT