Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00196 ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGCACGTGCCCGTCGCGGGGGGTGGGCGCCGGCGTCAAGCTGTTCGGGGTGAGACTGACGGATGGATCAATCATAAAGAAAAGTGCCAGTATGGGAAACCTTAACCTCGCCTCCACACACCACCATTCTTCTCCCTCTTCCTCCAACCTCGCCGCCTCCTCTCCCAATCCAAGCTCTCCCTGCTCCGACCCGCCTCATGAGCCCCAAGGTTACTTGTCCGACGACCCCGCCCATATCTCCACCTTCGCTAACCGCCGCGGTGAAAGAAAAAAAGGTGTTGCGTGGACTGAAGAAGAGCATAGGCTGTTCTTAATTGGTCTGCAGAAGCTGGGCAAAGGAGACTGGCGTGGCATAGCACGTAATTTTGTCGTAACAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGACAAAGTCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCGGATATGACTTCAGATCCACCTTCTGTGCCAGAAGAACAAGTTCTGCTTCCACCTTCTGAGAACTCGCAACCTTGTACTGGAAAATCGCAGCCTTCACTAAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAAACTTCTCAAGAAAACATGGAACAGACCAATGAAACTATGATGGGATCAAACGGACTGACATCAATGGCTCCTCATGGATTCTTCCCCACTTATTTACCTGTTCCATTTCCCATATGGCCATCAGCTGCAGCTCCTTTTGAAGAAGTTAAGGGAGGAGAGACATCCCATCATCAGGTCCACAGGCCAATCCCAGTCATTGCCAAGGAACCTGTCAATGTTGACGAACTCGTGGGAATGTCTCATCTCAGCATTGGGGAAACACAGGTACGTGATAGAGAGCCTTCCCCACTTTCCTTAAAGTTGTTAGGGGAACCCTCTAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCCGATTTAAAAACTGGCAAGAACAAAGCAATTCAAGCGGTTTGA 1059 0.5042 MTRRCSHCSNNGHNSRTCPSRGVGAGVKLFGVRLTDGSIIKKSASMGNLNLASTHHHSSPSSSNLAASSPNPSSPCSDPPHEPQGYLSDDPAHISTFANRRGERKKGVAWTEEEHRLFLIGLQKLGKGDWRGIARNFVVTRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDMTSDPPSVPEEQVLLPPSENSQPCTGKSQPSLNLSLKSEFEPMETSQENMEQTNETMMGSNGLTSMAPHGFFPTYLPVPFPIWPSAAAPFEEVKGGETSHHQVHRPIPVIAKEPVNVDELVGMSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLKTGKNKAIQAV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00196 352 CDD SANT 109 154 IPR001005 -
Vian11g00196 352 Gene3D - 108 159 - -
Vian11g00196 352 MobiDBLite consensus disorder prediction 1 22 - -
Vian11g00196 352 SUPERFAMILY Homeodomain-like 104 158 IPR009057 -
Vian11g00196 352 MobiDBLite consensus disorder prediction 164 209 - -
Vian11g00196 352 Pfam Myb-like DNA-binding domain 109 154 IPR001005 -
Vian11g00196 352 NCBIfam myb-like DNA-binding domain, SHAQKYF class 105 157 IPR006447 GO:0003677
Vian11g00196 352 FunFam transcription factor MYB1R1 108 159 - -
Vian11g00196 352 MobiDBLite consensus disorder prediction 51 72 - -
Vian11g00196 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 158 IPR017930 -
Vian11g00196 352 MobiDBLite consensus disorder prediction 51 92 - -
Vian11g00196 352 MobiDBLite consensus disorder prediction 189 209 - -
Vian11g00196 352 MobiDBLite consensus disorder prediction 1 18 - -
Vian11g00196 352 SMART sant 106 156 IPR001005 -
Vian11g00196 352 PANTHER TRANSCRIPTION FACTOR KUA1 3 255 - -
Vian11g00196 352 ProSiteProfiles SANT domain profile. 110 158 IPR017884 -
Vian11g00196 352 ProSiteProfiles Myb-like domain profile. 102 154 IPR001005 -
Vian11g00196 352 MobiDBLite consensus disorder prediction 329 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00196 Vian-Chr11 1783343 1787073 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian11g00196 Myb_DNA-binding 5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00196 - - gmx:778036 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00196 11 1783343 1787073 Vian11g00196 11 1783343 1787073 ECH