Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00194 ATGTTCTCGTCAACCAGATGCGCTTTCCTGACCAACTCAGGGTTAGGTGGGTGTGGAAGCATGGGTGATGCGCCGAGGAAGCGTTCAAATCCTATGAGGGTGGTGTGCATGACCCCAAGCAACGGCAGGTCGGGTGATAGAAACAACAGCGTTGTGATGGAGACGCCTTTGAAAGAATTGAAAAAGGATTCTCCGGTGGATGACGTTGACGGTAACTCCATCTCGGCCGGTGGTCCTCAAGATGTATACGGCGAGGATAGGGCGACGGAGGACCAGTTTGTTACCCCTTGGAGTGTCTCCGTTGCTAGTGGTTATACATTGTTACGAGATCCTCACTTCAACAAAGGGCTTGCCTTCAGTGAAAAAGAGAGGGATGCTCACTACTTGCGTGGTCTTCTTCCCCCATCAGTTATTCCCCAAGAAACTCAGGTAAAGAAAATGATCCGGCACATACGCCAGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAACGAACGGCTATTTTACACACTTCTTATTAATCACGTTGAAGAGTTACTCCCTGTTGTTTACACTCCAACTGTTGGTGAAGCCTGTCAGAAATATGGGAGCATCTTTATGCGTCCTCAGGGTCTCTATATAAGTTTGAAAGAGAAGGGGAAGATCCGTGAAGTACTAAGGAATTGGCCTGAGAAGAACATCCAAGTCATAGTTGTAACTGATGGAGAACGAATCCTGGGTCTTGGTGATCTTGGTTGTCAGTGTTTGCCTATTACCATTGATGTGGGTACAAACAATGAGCAGTTGCTGAATGATGAATTATACATTGGGCTAAAGCAAAGACGTGCAACTGGGCAGGAGTACGCCGAGCTTATGCACGAATTTATGACAGCACTCAAGCAAACTTATGGAGAAAAGGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTCGAGAAATATAGGTCAACACATCTGGTCTTTAATGATGATATTCAGGGAACAGCATCGGTTGTCCTTGCTGGATTAGTTGCAGCTCTGAAATTGGTTGGTGGTAATTTAGCTGATCACAGATTCTTGTTTCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATGCTCCACTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTTAGCTCCCGCAAAGATTCACTCCAACATTTCAAGAAGCCCTGGGCTCATGAGCATGAACCTGTTAACAATCTTTTAGATGCTGTTAATCAAATTAAACCGACAGTGCTGATTGGGACATCGGGACAAGGAAGAACTTTTACTAAAGAGGTGATTGAGGCTATGGCCTCTTTCAACGAGAAACCTATTATTCTTTCTCTTTCCAACCCTACGTCACAGTCAGAATGTACTGCTGAAGAAGCTTACAAATGGAGTCAGGCCAACAATGCATACATATTTCCTGGATTCGGACTCGGTTTGATAATGTCTGGGACCATTCGAGTGCATGATGACCTTCTTCTGGCTGCCTCCGAGGCTCTGGCTTCACAAGTTAGCCAAGAGAACTTTGACATGGGTCTCATATACCCACCATTCACCAACATTAGAAAGATTTCAGCTCACATAGCTGCCAATGTTGCTGCTAAGGCTTATGAGCTTGGTTTGGCCACTCGGCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCAGAGAGTTGTATGTACACTCCATCCTACAGAACCTACCGATGA 1791 0.4517 MFSSTRCAFLTNSGLGGCGSMGDAPRKRSNPMRVVCMTPSNGRSGDRNNSVVMETPLKELKKDSPVDDVDGNSISAGGPQDVYGEDRATEDQFVTPWSVSVASGYTLLRDPHFNKGLAFSEKERDAHYLRGLLPPSVIPQETQVKKMIRHIRQYQVPLQKYMAMMDLQERNERLFYTLLINHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKIREVLRNWPEKNIQVIVVTDGERILGLGDLGCQCLPITIDVGTNNEQLLNDELYIGLKQRRATGQEYAELMHEFMTALKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVNQIKPTVLIGTSGQGRTFTKEVIEAMASFNEKPIILSLSNPTSQSECTAEEAYKWSQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVSQENFDMGLIYPPFTNIRKISAHIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPSYRTYR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00194 596 PANTHER MALIC ENZYME-RELATED 254 494 - -
Vian11g00194 596 PIRSF ME 78 254 IPR001891 GO:0004470|GO:0004471
Vian11g00194 596 PIRSF ME 253 596 IPR001891 GO:0004470|GO:0004471
Vian11g00194 596 Gene3D - 335 596 - -
Vian11g00194 596 MobiDBLite consensus disorder prediction 62 84 - -
Vian11g00194 596 Pfam Malic enzyme, N-terminal domain 168 254 IPR012301 GO:0004471
Vian11g00194 596 SMART malic_2 168 327 IPR012301 GO:0004471
Vian11g00194 596 CDD NAD_bind_1_malic_enz 337 590 - -
Vian11g00194 596 Gene3D - 102 254 IPR037062 GO:0004471
Vian11g00194 596 Gene3D - 255 334 IPR037062 GO:0004471
Vian11g00194 596 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vian11g00194 596 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 82 336 IPR046346 -
Vian11g00194 596 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 337 596 IPR036291 -
Vian11g00194 596 PRINTS Malic enzyme signature 234 263 IPR001891 GO:0004470|GO:0004471
Vian11g00194 596 PRINTS Malic enzyme signature 174 198 IPR001891 GO:0004470|GO:0004471
Vian11g00194 596 PRINTS Malic enzyme signature 467 483 IPR001891 GO:0004470|GO:0004471
Vian11g00194 596 SMART Malic_M_2 337 565 IPR012302 GO:0051287
Vian11g00194 596 ProSitePatterns Malic enzymes signature. 333 349 IPR015884 GO:0004471
Vian11g00194 596 Pfam Malic enzyme, NAD binding domain 337 494 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00194 Vian-Chr11 1755639 1760479 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00194 K00029 - gmx:100791514 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00197 9 1613103 1617973 Vian11g00194 11 1755639 1760479 ECH
Vian1g04015 1 63227338 63231900 Vian11g00194 11 1755639 1760479 ECH
Vian4g01790 4 34165389 34169466 Vian11g00194 11 1755639 1760479 ECH
Vian11g00194 11 1755639 1760479 Vian11g00194 11 1755639 1760479 ECH
Vian11g00194 11 1755639 1760479 Vian4g01790 4 34165389 34169466 ECH
Vian11g00194 11 1755639 1760479 Vian9g00197 9 1613103 1617973 PCT