Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00181 ATGGCTGGCATAGCATTCGGACGCTTCGATGATTCTTTTAGTTTTGCCTCCATCAAGGCCTACATTGCTGAGTTCATCTCAACCCTTCTCTTTGTTTTTGCTGGTGTCGGTTCAGCCATAGCCTATGCTAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGGTTGGTAGCTGTTGCCATTGGCCATGGTTTTGCTCTCTTCGTTGCTGTTTCAGTCGGAGCCAACATTTCTGGTGGCCATGTTAACCCTGCTGTGACCTTTGGGTTGGCTCTTGGAGGTCACATCACCATCCTCACTGGTCTCTTCTACTGGATTGCGCAGCTCCTTGGCTCCATAGTGGCCTGCTTTCTCCTCAAGTTTGTCACTGGCTATAGTATTCCTATCCACGGTGTTGCTGCGGGAGTTGGAGCCGGAGAAGGAGTTGTTACTGAGATCATCATCACATTTGGATTAGTGTACACAGTGTATGCTACAGCTGCAGACCCAAAGAAGGGTTCACTTGGTACAATTGCACCCATTGCCATAGGTTTCATCGTTGGTGCAAACATCTTAGCTGCAGCACCATTTTCTGGGGGATCCATGAACCCTGCACGTTCCTTTGGCCCTGCAGTTGTCAGCGGTGACTTTCATGACAACTGGATCTACTGGATTGGCCCTCTTGTTGGTGGTGGTTTGGCTGGTCTTATCTACACCTATGCCTTCATTCCCACCCAGCACCATGCACCTCTCGCCACTGATTTTTGA 747 0.4953 MAGIAFGRFDDSFSFASIKAYIAEFISTLLFVFAGVGSAIAYAKLTSDAALDPAGLVAVAIGHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGLFYWIAQLLGSIVACFLLKFVTGYSIPIHGVAAGVGAGEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAAPFSGGSMNPARSFGPAVVSGDFHDNWIYWIGPLVGGGLAGLIYTYAFIPTQHHAPLATDF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00181 248 PANTHER AQUAPORIN-8 4 241 IPR034294 -
Vian11g00181 248 CDD MIP 19 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00181 248 FunFam Probable aquaporin TIP1-1 2 248 - -
Vian11g00181 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Vian11g00181 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00181 248 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00181 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00181 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00181 248 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00181 248 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00181 248 NCBIfam MIP family channel protein 23 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00181 248 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
Vian11g00181 248 Pfam Major intrinsic protein 15 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00181 248 SUPERFAMILY Aquaporin-like 14 241 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00181 Vian-Chr11 1590857 1592085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00181 1 248 Major Intrinsic Protein MIP AT3G16240 78.400 2.81e-136 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00181 K09873 - gmx:100817754 447.973