Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00177 ATGTCTAGAGCATTGGAACAGGACTACATAGGGTTGGCAGAGAAACCGTCAATGGACGGAGGCTCTGACAAACTATCTTCTTCTTCTTCGTCATCTTCTGTGGATGGTAAAACCTCATCACTGAACTTGAAGGAGACAGAACTGAGGCTTGGTCTCCCCGGTTGCAAGTCACCAGAGAGAAAATCTGGTCCTGGACTCTGTCTTTTTGGCAGAGAGTTGCAGAACAAGCATAATGTTTGTTCAGTCGCAACCCCTTTGAAGGCTGGGGCTAAGAGGGGATTCTCTGATGCTATTGACGCTTCTTCTGGGAAAAGGGGTTCTTCTGTCACCGATGGATCTCAAGGAGCTGCTTTGTTCTCTCCCAGAGGGGGCATTGTTGGGAAGCCTCTTATTGCTTTAGACACTCAAACTAATACCTCGCGTGCTAACACCTCTATCAAAGAGGTTGGTGCAGTTCCTCAATCTGCCAAACCGGTTCAGGAGAAGAATGACCAGGTTGCTGCAACAGATGGTCAGGCCAGTGCTTCTGATGCAAAGGCACAAGTTGTGGGGTGGCCCCCAATTCGATCTTTCCGAAAGAACACGATGGCATCTAATCTGGCAAAAAACAGTGATGAAGGCGAGGGAAAATCTGGTTTTGGTTGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTTAGAAAGGTTGATCTCAAAACCTATAACAACTACATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGATTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTCTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAAGCAATTGGGCTAGCTCCAAGAGCCATGGAGAAATCTAGAAGCCAAAACTAG 1008 0.4593 MSRALEQDYIGLAEKPSMDGGSDKLSSSSSSSSVDGKTSSLNLKETELRLGLPGCKSPERKSGPGLCLFGRELQNKHNVCSVATPLKAGAKRGFSDAIDASSGKRGSSVTDGSQGAALFSPRGGIVGKPLIALDTQTNTSRANTSIKEVGAVPQSAKPVQEKNDQVAATDGQASASDAKAQVVGWPPIRSFRKNTMASNLAKNSDEGEGKSGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGFPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00177 335 Pfam AUX/IAA family 45 326 IPR033389 -
Vian11g00177 335 FunFam Auxin-responsive protein 210 327 - -
Vian11g00177 335 ProSiteProfiles PB1 domain profile. 215 317 IPR000270 GO:0005515
Vian11g00177 335 MobiDBLite consensus disorder prediction 158 173 - -
Vian11g00177 335 MobiDBLite consensus disorder prediction 149 173 - -
Vian11g00177 335 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 41 322 IPR003311 GO:0005634|GO:0006355
Vian11g00177 335 MobiDBLite consensus disorder prediction 1 45 - -
Vian11g00177 335 MobiDBLite consensus disorder prediction 21 45 - -
Vian11g00177 335 SUPERFAMILY CAD & PB1 domains 215 316 - -
Vian11g00177 335 Gene3D - 210 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00177 Vian-Chr11 1544507 1546522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00177 217 329 B3 DNA Binding Superfamily AT1G19850 32.174 5.85e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian11g00177 AUX_IAA 1.7e-90 CL0072