Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00160 ATGGAGTTTTGGCCGGAGTTTCTTGCGAGCAGCACCGGAAAAGAGTTTGTAGCAGGAGGGTTTGGAGGCACTGCCGGAATAATCTCCGGTTACCCTTTAGACACTCTCCGTGTGATGCAGCAGAACTCCTTCAACACCGCCTCCGCCTTCAGCATCCTCAGAAATGTGGTGGCCAATGAAGGACCAACCGCTCTCTACCGCGGCATGGCGGCACCTTTGGCCTCTGTTACCTTTCAGGCTCGTCACGTGGTTGATGGGAATGCTATGGTTTTCCAAATTTACGCAATTCTTTCAAGGGCATTTAGTTCGTCCGATTTGGTTAACGATCCTCCTTCTTACAAGGGTGTTGCTTTAGGAGGATTTTGTAGCGGTGCCATACAGAGTATGATACTATCCCCTGTTGAGTTAGTTAAAATTCGGCTTCAGTTGCAGAACACAGGTCAATCCATAGAAACCCGAAAAGGTCCTATGAAGGTGGCAAAAAACATATGGAAAATAGAGGGTCTTCGTGGCATGTACCGGGGACTTGGGATCACCATGCTAAGAGATGCACCAGCACATGGTCTCTACTTTTGGACATATGAATATGCAAGGGAGAAGCTTCACCCAGGTTGTAGAAGAAGTTGTGAAGAGAGCCTGAATACTATGCTGGTATCAGGAGGATTAGCTGGGGTGGTGAGTTGGGTTTTGAGCTACCCTTTAGACGTTATAAAAACAAGATTGCAGGCTCAAACACTTTCTTCGCAGAAATACAGAGGCATTTTGGATTGCCTTAGGAAGAGTGTTAGAGAAGAAGGATATGAGGTTCTATGGAGGGGTTTAGGAACTGCAGTTGCTAGAGCTTTTGTGGTGAACGGTGCTATATTTTCTGCATATGAGATCACTCTGAGGTGTCTGTTTGATAAATAA 909 0.4631 MEFWPEFLASSTGKEFVAGGFGGTAGIISGYPLDTLRVMQQNSFNTASAFSILRNVVANEGPTALYRGMAAPLASVTFQARHVVDGNAMVFQIYAILSRAFSSSDLVNDPPSYKGVALGGFCSGAIQSMILSPVELVKIRLQLQNTGQSIETRKGPMKVAKNIWKIEGLRGMYRGLGITMLRDAPAHGLYFWTYEYAREKLHPGCRRSCEESLNTMLVSGGLAGVVSWVLSYPLDVIKTRLQAQTLSSQKYRGILDCLRKSVREEGYEVLWRGLGTAVARAFVVNGAIFSAYEITLRCLFDK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00160 302 SUPERFAMILY Mitochondrial carrier 12 293 IPR023395 -
Vian11g00160 302 PRINTS Mitochondrial carrier protein signature 126 144 IPR002067 GO:0055085
Vian11g00160 302 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Vian11g00160 302 PRINTS Mitochondrial carrier protein signature 220 242 IPR002067 GO:0055085
Vian11g00160 302 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Vian11g00160 302 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Vian11g00160 302 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 299 - -
Vian11g00160 302 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Vian11g00160 302 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 200 IPR018108 -
Vian11g00160 302 Gene3D Mitochondrial carrier domain 12 302 IPR023395 -
Vian11g00160 302 Pfam Mitochondrial carrier protein 11 78 IPR018108 -
Vian11g00160 302 Pfam Mitochondrial carrier protein 117 201 IPR018108 -
Vian11g00160 302 Pfam Mitochondrial carrier protein 216 301 IPR018108 -
Vian11g00160 302 FunFam Mitochondrial arginine transporter BAC2 11 302 - -
Vian11g00160 302 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 298 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00160 Vian-Chr11 1409180 1411223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00160 1 302 Antiporters AT1G79900 68.212 1.79e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00160 K15109 - gmx:100812034 528.48