Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00149 ATGGATGGCATTGAGGATGATGCGAGCTATCACCCTAACCCATATCGCATCATCAGTCACCAACGAGGTTATGGTTATCAGAATTCTCCATATTCCCTCCCTGTTAATACTGAATATGCCCATCATCATGATGAAGATGAAGAACAAGAACAGTTAGAAGGAGATGATGAGGTTGATCAAAGTAACAGCCTTCAGCTTCCCCAAAAGGATGGGGATGAAGAAAATGGCATAGATGGGGTTGGTGATGAAAACGATGATGAGGAAGAGGAGGTAGAGGATGATAAGCAGATTGGTTATTATGCCATTAAGAGTGAAGATGATTTGGAGTGGCCTCCAAAGAAGCAAAAGCTGAAGAGTTTGATTTCAACCTATGAACTTGCTTCTCGTGTGCCAGCGCCATCAGCTGCAGCTCCAGTTCCTTCTGCTCCCAAACCATCTTCTGGGGGTAGGAATTCACTTACTGACTGGACTGAGCATGAGACGTTTGTTCTGCTCGATGCATGGGGTGATACGTTTCTTCAACTTGGAAGGAAGAGTCTTCGATGTGAGGAATGGCAGCAAGTATCGAAAATGGTAGCACAAGTTTCAAAAATTGAAAGGACGGATACTCAGTGTAGAAACCGCCTTGACACACTGAAGAAAAAATACAAGAAGGAGAAGGCTAAATTTCAAGAGAGTGATGGTGGAGATTGCAAATGGGTTTATTTTAAAAGAATGGATGAGCTAATGAGTTCACCCCCTCAACAAGTTGGTATCTCTTGTGGTTTGGACTCGGGAGATTATGTTTTTATGAACCGTGGAGTTTATTTGAATCAAGCTAATGGGTTGGATGAATTGAGGGATAGTCCTGAGAATGTGGAATCTACCGGTGAAGAAGGTTCAGATGGACTTCAACTTCAAGCAAAGAAAAGGAAAGGAAGGAGCAGTGGCGAAGCTTCTTCCTTCAGGTTGCTTGCTGATTCCATACAGAAATTCAGTAGGATATATGAAAAGATAGAAAATAATAAAAGGCAGCAGATGATGGAACTGGAAAAAATGAGAATGGATTTCCATAAGGAATTGGAAACACAGAAGAGGCAGATATTAGGGAATTTGCAGAGTGAGATTTCAAAACTAGAGCAGAGAAATGATGAGAACGAAGATTCTGCTGAGAATGGTATGTGA 1164 0.4184 MDGIEDDASYHPNPYRIISHQRGYGYQNSPYSLPVNTEYAHHHDEDEEQEQLEGDDEVDQSNSLQLPQKDGDEENGIDGVGDENDDEEEEVEDDKQIGYYAIKSEDDLEWPPKKQKLKSLISTYELASRVPAPSAAAPVPSAPKPSSGGRNSLTDWTEHETFVLLDAWGDTFLQLGRKSLRCEEWQQVSKMVAQVSKIERTDTQCRNRLDTLKKKYKKEKAKFQESDGGDCKWVYFKRMDELMSSPPQQVGISCGLDSGDYVFMNRGVYLNQANGLDELRDSPENVESTGEEGSDGLQLQAKKRKGRSSGEASSFRLLADSIQKFSRIYEKIENNKRQQMMELEKMRMDFHKELETQKRQILGNLQSEISKLEQRNDENEDSAENGM 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00149 387 FunFam trihelix transcription factor ASIL2 156 218 - -
Vian11g00149 387 MobiDBLite consensus disorder prediction 76 94 - -
Vian11g00149 387 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 138 378 IPR044823 -
Vian11g00149 387 MobiDBLite consensus disorder prediction 371 387 - -
Vian11g00149 387 MobiDBLite consensus disorder prediction 275 313 - -
Vian11g00149 387 MobiDBLite consensus disorder prediction 130 151 - -
Vian11g00149 387 Gene3D - 156 218 - -
Vian11g00149 387 Coils Coil 329 360 - -
Vian11g00149 387 Pfam Myb/SANT-like DNA-binding domain 155 242 IPR044822 -
Vian11g00149 387 MobiDBLite consensus disorder prediction 365 387 - -
Vian11g00149 387 Coils Coil 362 382 - -
Vian11g00149 387 MobiDBLite consensus disorder prediction 21 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00149 Vian-Chr11 1325315 1326478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00149 303 385 Trihelix Transcription Factor Family AT3G14180 39.759 5.83e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian11g00149 Myb_DNA-bind_4 1.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00149 - - gmx:100779629 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00149 11 1325315 1326478 Vian11g00149 11 1325315 1326478 ECH