Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00136 ATGGATGTTACTTCTCTGGGTTCAAGTACCAATACCCAAACTGACCAACACCCTTTGCTGATGGAGCAACCGGAAAATCATAATGGTCGTCAGCACGTAATTGACATTACTACGAATGGTGAAGCTCTAACTATGTCTTCCCATATTGATCAACACTCTGAAATGCATTTACCGCAGAGTGGAGATCAACCAGCTGCGGACACACAAGATTCCACTCATCAAGCATCTTCATCTTCGGCATCCAGATTAAACTCTAGAAATTCAGCTTCGCTAAGAAGAGGTGAAGGATATGGTCATCGTGGTCGGAGTCCATTGAATTCTGGATTGTGGATTTCTGTTGAGCTTTTTGTCACTGTGAGTCAGATCATAGCATCTATAGTCGTTTTGTCGCTGTCCAGGAATGAAAATCCCCAAGCTCCATTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTATATTGGCGTTTTCGAAACCGTAATCAAAGCAATGAACAAGATTCCTCTCAACCATCTCAAGGATCTTCCGGAAGCAATCCTCCAGATCGTACCTATACTGCTATCTATGTTTCTCATGTCTCAGACGAGGAGAATGGTAATGCTACACAATCAGCCACAAGAAACCCTATAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTTGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTTGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAGTTATATAGATTATGTATTGTTTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCATTTATACTCTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGGGAGGAATTTTCTCATAATAGAGGAGCAACAGTGGAATCAATTAATGCTCTACCAATCTTCAAGTTCAAATTGAAGAACAATGAAAACGTTGATGATCAGGATGTCAATGCAGCTTTGGATGAGGGTGGAATTTTGGCTGCGGGAACAGAAAAAGAGCGAGTTATTTCAGGAGAAGACGCTGTTTGTTGCATTTGCTTAGCAAAATACGCAGATGATGATGACCTTAGAGAGTTACCTTGCTCTCACGTTTTTCATGTAGTGTGTGTTGACAAATGGTTAAAGATAAATGCATCATGCCCTCTTTGTAAAACAGAAGTTGGTACAACTAATGGAGAGTCACCTTCAGCCTGGGACTCCAGTACTCATTAG 1278 0.4131 MDVTSLGSSTNTQTDQHPLLMEQPENHNGRQHVIDITTNGEALTMSSHIDQHSEMHLPQSGDQPAADTQDSTHQASSSSASRLNSRNSASLRRGEGYGHRGRSPLNSGLWISVELFVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSNEQDSSQPSQGSSGSNPPDRTYTAIYVSHVSDEENGNATQSATRNPIIPGAFTSRLNGFVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREEFSHNRGATVESINALPIFKFKLKNNENVDDQDVNAALDEGGILAAGTEKERVISGEDAVCCICLAKYADDDDLRELPCSHVFHVVCVDKWLKINASCPLCKTEVGTTNGESPSAWDSSTH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00136 425 MobiDBLite consensus disorder prediction 1 21 - -
Vian11g00136 425 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Vian11g00136 425 MobiDBLite consensus disorder prediction 54 99 - -
Vian11g00136 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 414 IPR013083 -
Vian11g00136 425 MobiDBLite consensus disorder prediction 1 29 - -
Vian11g00136 425 Pfam Ring finger domain 365 406 IPR001841 -
Vian11g00136 425 SMART ring_2 365 405 IPR001841 -
Vian11g00136 425 SMART ringv_2 364 406 IPR011016 GO:0008270
Vian11g00136 425 SUPERFAMILY RING/U-box 357 412 - -
Vian11g00136 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 409 - -
Vian11g00136 425 MobiDBLite consensus disorder prediction 54 91 - -
Vian11g00136 425 FunFam E3 ubiquitin-protein ligase 348 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00136 Vian-Chr11 1205240 1207818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00136 1 416 C3H Transcription Factor Family AT1G80400 57.346 6.74e-171 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00136 - - gmx:100819729 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00136 11 1205240 1207818 Vian11g00136 11 1205240 1207818 ECH