Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00135 ATGGAGAAAGAAGATCTTGGCCTTGAAATCACCGAGCTCCGGTTGGGCCTTCCCGGCGCCGCTGCGGAGAACAACACCGACAAGGACAAGAATAAGAACAAAAAGAGGGTCTTCTCCGACATTGAAGGTGAAAACAGCTCCTCTGAAGATGGCAAAAAAGAAACCAAGAATCAAGTTGTCGGGTGGCCTCCGGTTTGCTCCTACCGCAAGAAGAACACCGTCAATGAACCTAAACTCTACGTTAAAGTCAGCATGGACGGCGCTCCTTTCTTGCGTAAAATCGATTTAGCCATGCACAAGGGATACTCCGACTTGGCCTTCGCCTTGGACAAGTTCTTCGGTTGCTACGGAATCGGCGAAGCGTTGAAGGATGCGGAAAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGCGACTGGATGCTGGTTGGAGATGTTCCTTGGGAGATGTTTAGGGAGTCATGCAAGAGATTGAGGATTATGAAGAGATCAGATGCAAAGGGGTTCGATCTGCAGCCAAAAGGGTCTTTAAAGGGATTCATAGAAGGCGTGAGAAAATGA 564 0.4858 MEKEDLGLEITELRLGLPGAAAENNTDKDKNKNKKRVFSDIEGENSSSEDGKKETKNQVVGWPPVCSYRKKNTVNEPKLYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGCYGIGEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVRK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00135 187 MobiDBLite consensus disorder prediction 25 56 - -
Vian11g00135 187 FunFam Auxin-responsive protein 73 174 - -
Vian11g00135 187 MobiDBLite consensus disorder prediction 19 56 - -
Vian11g00135 187 Gene3D - 72 175 - -
Vian11g00135 187 SUPERFAMILY CAD & PB1 domains 72 163 - -
Vian11g00135 187 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 167 IPR003311 GO:0005634|GO:0006355
Vian11g00135 187 Pfam AUX/IAA family 37 170 IPR033389 -
Vian11g00135 187 ProSiteProfiles PB1 domain profile. 78 166 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00135 Vian-Chr11 1187759 1190002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00135 35 168 B3 DNA Binding Superfamily AT1G34390 29.851 2.82e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian11g00135 AUX_IAA 1.1e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00135 K14484 - gmx:100811879 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00135 11 1187759 1190002 Vian11g00135 11 1187759 1190002 ECH
Vian9g00136 9 1055871 1058871 Vian11g00135 11 1187759 1190002 PCT