Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00092 ATGATTTATGTTCATGCCAAGATGATGATAGTTGATGACGAATACATAATCATTGGATCTGCCAACATAAACCAGAGATCAATGGATGGTGCTAGAGATTCTGAGATTGCTATGGGTGCATATCAACCCTATCGTCTGGGTAGGAGGGTGCCTGCAAGGGGTGAGATTCATGGTTTTCGTATGTCATTGTGGTATGAACATCTCGGCATGCTTCATGAGTGCTTCGTCCACCCTGAAAGTGAAGAATGTATAAAGAAGGTAAACGAGATGGGTGAGAAGTATTGGGATCTGTATACTACTGAGCCACTTGAACGAGACCTTCCCGGTCATCTTCTTCGGTACCCTGTTGCAGTTTCCGGCGAAGGAAGTGTGACACAACTGAAAGGATTTGGGGTCAAATCTGACTACATGCCACCTATTCTTACTACTTAG 432 0.4421 MIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYRLGRRVPARGEIHGFRMSLWYEHLGMLHECFVHPESEECIKKVNEMGEKYWDLYTTEPLERDLPGHLLRYPVAVSGEGSVTQLKGFGVKSDYMPPILTT 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00092 143 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1 27 IPR001736 GO:0003824
Vian11g00092 143 SMART pld_4 1 27 IPR001736 GO:0003824
Vian11g00092 143 Pfam Phospholipase D C terminal 73 137 IPR024632 -
Vian11g00092 143 PANTHER PHOSPHOLIPASE D 1 128 IPR015679 -
Vian11g00092 143 Pfam Phospholipase D Active site motif 1 27 IPR001736 GO:0003824
Vian11g00092 143 SUPERFAMILY Phospholipase D/nuclease 2 84 - -
Vian11g00092 143 Gene3D Endonuclease Chain A 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00092 Vian-Chr11 789961 790473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00092 1 143 Phospholipase D Gene Family (Wang group) AT1G52570 72.078 2.22e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00092 K01115 - ini:109165505 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00102 9 804357 807864 Vian11g00092 11 789961 790473 ECH
Vian4g01969 4 36346455 36348902 Vian11g00092 11 789961 790473 ECH
Vian11g00092 11 789961 790473 Vian11g00092 11 789961 790473 ECH
Vian11g00092 11 789961 790473 Vian9g00102 9 804357 807864 PCT