Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00058 ATGGTATCAAGAACTCCCTTCTCAATGGCAAGAAAGGTTGGTGCTGAGTTCATCCGGACTTTCATTCTTATGTTTGCTGCCACTGCCGCCGCCATTGTCAACCAGAAGACAAACGGCTCTGAGACCCTCATAGGCTGTGCTGCCACCACTGGTCTCGCCGTTATGATCGTCATCCTCGCCACTGGCCACATCTCCAGTGCTCATCTCAACCCTGCTGTCACCTTTTCCTTTGCTGCATTGAAGCACTTTTCCTGGAGGCATGTGCGTACAAACACTTATTTTAGTTATTTATTCTGTGGTAAAAAAACAGTTCTTGTTACCATTATTGGTCTATTGGTGGCATTGGTGAAAACAAACCATTCTCATTGGTGGGGTAGGGACAACAACGAGGAAATCCCTTCAACACTTGCCACCCCAAACACTCCTGGTGCACCTCTTTATGGAGGTTTCACCAATGCACCAATAGGACTAACAATGGAAACAAGAACTCTCTTCTCAAGAGTGGTAGATGTTTCATTGAGACCTTCATTCTCATGTTGGCCACCACTGCCGCCGTCATTGTCAACCAGAAGACAAACGGCTCTAAGACTCTCATAG 597 0.4673 MVSRTPFSMARKVGAEFIRTFILMFAATAAAIVNQKTNGSETLIGCAATTGLAVMIVILATGHISSAHLNPAVTFSFAALKHFSWRHVRTNTYFSYLFCGKKTVLVTIIGLLVALVKTNHSHWWGRDNNEEIPSTLATPNTPGAPLYGGFTNAPIGLTMETRTLFSRVVDVSLRPSFSCWPPLPPSLSTRRQTALRLS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00058 198 ProSitePatterns MIP family signature. 68 76 IPR022357 -
Vian11g00058 198 Gene3D Glycerol uptake facilitator protein. 2 116 IPR023271 -
Vian11g00058 198 Pfam Major intrinsic protein 8 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00058 198 PRINTS Major intrinsic protein family signature 50 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00058 198 PRINTS Major intrinsic protein family signature 11 30 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00058 198 SUPERFAMILY Aquaporin-like 9 91 IPR023271 -
Vian11g00058 198 PANTHER AQUAPORIN NIP2-1 6 90 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00058 Vian-Chr11 490883 492773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00058 8 88 Major Intrinsic Protein MIP AT1G80760 76.543 5.64e-38 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00058 K09874 - gmx:100815637 145.591