Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00057 ATGGAGCTTGTGTGGTCAGGGCCACATCCATCATCTGAAAATGATCTGAAAAGTCCATTTTCAGAGAATCCTCCACCTTGCTCAAAGCCAGTGCTAGCTTCCATGGATATCCAAAAGGAGAAGAAGGAGGACCAAGAACATCCCTATGAGTCAAAGCCAGAACTGAACCTCATAAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCATGTCATGGAGGAGGACACGGTGATGAATTGGAGCCAAGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGTTCGCAGGCCCTTGGGGGACACCAGAATGCGCATAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACAGAGCTGGTGCTGCAGCTCCAACAGATTTTGCACACAGGTATTCCAGCATGGCTTCTCTGCCTCTGCATGGCTCCTATAACAGGTCACTTGGAATTCAGGCACATTCCATGATCAACAAACGCTGTTTTCAAACACAAACACCTTGTTTTGGTTTGTCCCATTGTCATGCTCAAAACTGGTGGCAGAAGCAGCCTTTGTACTCACAAGAACAGGCAACTGGGGCAGAATCTGAATCACCCTTGGCTGGTGGCATCCAACGGCTAGGGAAGTTTTCTCCAAGGCTGGTGCCAGAGGGATTTGGAGGCTACTGGTTGGACAGTGTTCACCATTTGAAGACTAAACAAGAGGAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA 744 0.4677 MELVWSGPHPSSENDLKSPFSENPPPCSKPVLASMDIQKEKKEDQEHPYESKPELNLINCIDTNLSMNSSESCHGGGHGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHRAGAAAPTDFAHRYSSMASLPLHGSYNRSLGIQAHSMINKRCFQTQTPCFGLSHCHAQNWWQKQPLYSQEQATGAESESPLAGGIQRLGKFSPRLVPEGFGGYWLDSVHHLKTKQEELHKLDLSLKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00057 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 32 247 IPR044246 GO:0009788
Vian11g00057 247 MobiDBLite consensus disorder prediction 35 51 - -
Vian11g00057 247 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vian11g00057 247 Gene3D Classic Zinc Finger 67 134 - -
Vian11g00057 247 FunFam Zinc finger protein 2 64 133 - -
Vian11g00057 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Vian11g00057 247 MobiDBLite consensus disorder prediction 1 51 - -
Vian11g00057 247 SUPERFAMILY beta-beta-alpha zinc fingers 84 114 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00057 Vian-Chr11 485308 486051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00057 54 247 C2H2 Transcription Factor Family AT5G10970 43.192 6.49e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g00057 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00057 - - vun:114185863 457.218