Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00056 ATGGCTAGACCCCAACAACGCTATCGTGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACCAGAATATGGCTGGGAACGTTTGAAACAGCGGAAGATGCTGCCAGAGCGTACGATGAAGCGGCAAGGTTAATGTGCGGGCCAAAAGCACGCACCAATTTCGCTTACAATCCTAACGACCCACAATCATCTTCATCGAAGCTACTTTCTGCTACTCTGACTGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCGCTTCAAATGAGCAAGCAGAAGGGATCGCAGAAAGAGGCTGAAGAAGGGTCATCCAATTCAGGCAATGCCGTTGCGGGAACGAGCGCGGACACAACAGGGTTCAGATGGGCAGAGAAGAGACAGAAGGAAGTTCAGTGGGTAGAAGAATACCATGTTGAAGTGGGAGAAGGAGAACAGCAACAGTTTCATCCAGTTCTTGAAGATGATCACATTGAACAGATGATACAGGAGCTTCTTGATTATGGGTCAATGGAGTTTAGTTGTGTGGACTCAGTCTAA 564 0.4911 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFAYNPNDPQSSSSKLLSATLTAKLHKCHMASLSLQMSKQKGSQKEAEEGSSNSGNAVAGTSADTTGFRWAEKRQKEVQWVEEYHVEVGEGEQQQFHPVLEDDHIEQMIQELLDYGSMEFSCVDSV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00056 187 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vian11g00056 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vian11g00056 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vian11g00056 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vian11g00056 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vian11g00056 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vian11g00056 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vian11g00056 187 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vian11g00056 187 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vian11g00056 187 MobiDBLite consensus disorder prediction 97 126 - -
Vian11g00056 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 122 - -
Vian11g00056 187 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00056 Vian-Chr11 477401 478161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00056 1 184 AP2-EREBP Transcription Factor Family AT5G25190 61.957 8.62e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian11g00056 AP2 7.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00056 - - gsj:114375612 281.182