Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00055 ATGAGATTGGGTGACACGTGGGAGCGCATGGGCGGGGTCAAAGGGAACGCCAGGAGGCTCGGTGCTTGGCTCGAGCGGATTCCTGTCGATGAAGTGTTCCGCGAACTGAATTGTACTAAGGAAGGTCTCACCAATGAGGAAGGCCAAAAGAGAGATGGAAAGTGGTCTGAAGTGGACGCTTGCATACTGGTACCGGGAGATATAATCAGCATCAAACTGGGAGACATCATCCCAGCTGATGCTCGTCTCTTGGAAGGAGATTCCCTCAAGATTGATCAATCTGCACTCACGGGTGAGTCATTACCTGTTACTAGGAACCCCGGTGATGAAGTCTTCTCTGGCTCCACGGTAAAACAAGGAGAGATTGAAGCAGTTGTAATCGCTACTGGGGTTCATACCTTCTTCGGTAAGGCTGCTCACCTAGTCGACAGCACTAACCAAGTTGGCCATTTCCAAAAGGTGTTGACGGCCATTGGAAATTTCTGCATTTGCACAATTGCTCTGGGGATGATCATTGAAATTGTGGTTATGTATCCAATTCAGCACCGCAAGTACAGGAGTGGAATCAACAACCTCTTGGTCCTTCTCATTGGAGGGATTCCCATTGCCATGCCTACAGTCTTGTCAGTAACAATGGCAATTGGTTCCCACAGGCTCTCTGAGCAAGGTGCTATCACCAAGAGGATGACAGCCATTGAGGAAATGGCTGGGATGGATGTTCTGTGCAGTGACAAGACTGGCACTCTAACACTTAACAAGCTCACTGTAGACAAGTCTTTGATTGAGGTTTTCTCAAGAGATGCTGACAAAGATACAGTGATTTTGCTTGGAGCTAGGGCCTCCAGGGTGGAAAACCAGGATGCTATTGATACTTGCATAGTTGGAATGTTGGGTGATCCAAAAGAGGCTAGAGATGGCATTACAGAGGTGCATTTTCTTCCATTTAACCCAGTGGACAAGCGCACTGCCATAACATACATAGACAGTGAAGGTAACTGGTACCGAGTAAGCAAGGGTGCACCAGAACAGATTATCGAGCTCTGCAACCTTCGGGAAGACGTGAAGAAGAAGGCTTTATCCATCATTGGAAAATTTGCTGATCGCGGTCTTCGTTCGCTTGCTGTCTCAAAACAAGAAGTGCCAGAAAAGACAAAGGAGAGTGCCGGAGGACCATGGCAGTTCGTGGGTCTGTTACCACTTTTTGACCCACCAAGGCATGACAGTGCTGAGACTATAAGGCGCGCTCTCCATCTGGGAGTTAACGTTAAGATGATTACAGGTGATCAGCTAGCTATCGGCAAGGAAACTGGTCGCAGACTTGGCATGGGAAGCAACATGTATCCTTCTTCATCACTCCTCGGTCAGAATAAGGATGAGTCCATGTCTGCAATTCCCATTGATGAACTTATTGAGAAAGCTGATGGCTTTGCCGGTGTCTTCCCTGAGCACAAGTACGAGATAGTGAAGAGACTCCAGGACAGGAAACACATTTGTGGGATGACAGGAGATGGTGTGAACGATGCTCCTGCACTCAAAAGAGCAGATATTGGAATCGCTGTTGCCGATGCAACTGACGCAGCTCGAAGTGCATCTGACATAGTTCTCACGGAGCCTGGCCTGAGTGTGATCGTGAGTGCTGTGTTGACAAGCAGAGCCATCTTCCAAAGGATGAAGAATTACACCATATATGCTGTTTCTATCACCATCCGAGTGGTGTTAGGCTTTTTGCTGCTTGCTCTGATATGGAAGTTTGACTTCTCACCCTTCATGGTTTTGATCATTGCCATTCTGAATGATGGAACCATCATGACCATTTCCAAAGACAGGGTTAAGCCATCTCCAATGCCAGATTCCTGGAAGTTGAGAGAGATTTTTATCACCGGCGTTGTTCTCGGTACCTACCTAGCTGTCATGACTGTTGTCTTCTTCTGGGCTGCTCATGCATCCAACTTTTTCTCGGACAAATTCGGAGTGAGATCCATCAGGGAAAACCACGGCGAGCTCACGGCAGCTGTTTATCTTCAAGTGAGCATTGTAAGTCAAGCACTCATCTTTGTGACACGCTCGAGGAGCTGGTCTTACGTTGAACGCCCTGGCCTGCTTCTTGTCGTTGCTTTTCTCATAGCACAGCTGATTGCCACAATCATAGCTGTGTATGCAAACTGGGGATTTGCAAAGATGAAAGGCATTGGATGGGGTTGGGCTGGTGTGATTTGGATCTACAGCATCGTTTTCTATATTCCCATGGATATTCTCAAGTTCATCATCCGATATGGACTAACTGGAAAGGCTTGGAACAATATCACCGATAATAGGGTTGCTTTCACCTCAAAGAACGATTATGGAAAGGGAGAAAGAGAAGCACAGTGGGCTGCAGCTCAGCGCACATTGCATGGCTTGAACCCACCTGAAACTGATGAGATGTTGAATGAGAGAAACAACTACAGGGAGCTGTCGGAACTTGCAGAACAGGCCAAGAAAAGGGCTGAGGTGGCAAGGCTAAGGGAGCTTCACACTCTAAAGGGTCATGTTGAGTCTGTTGTGAAGCTCAAAGGACTTGACATTGAGACAATCCAGCAGCACTACACAGTGTGA 2595 0.4755 MRLGDTWERMGGVKGNARRLGAWLERIPVDEVFRELNCTKEGLTNEEGQKRDGKWSEVDACILVPGDIISIKLGDIIPADARLLEGDSLKIDQSALTGESLPVTRNPGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICTIALGMIIEIVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFSRDADKDTVILLGARASRVENQDAIDTCIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYIDSEGNWYRVSKGAPEQIIELCNLREDVKKKALSIIGKFADRGLRSLAVSKQEVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGQNKDESMSAIPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRVVLGFLLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFITGVVLGTYLAVMTVVFFWAAHASNFFSDKFGVRSIRENHGELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLVVAFLIAQLIATIIAVYANWGFAKMKGIGWGWAGVIWIYSIVFYIPMDILKFIIRYGLTGKAWNNITDNRVAFTSKNDYGKGEREAQWAAAQRTLHGLNPPETDEMLNERNNYRELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00055 864 SUPERFAMILY HAD-like 238 548 IPR036412 -
Vian11g00055 864 Coils Coil 808 835 - -
Vian11g00055 864 Gene3D - 254 401 IPR023299 GO:0000166
Vian11g00055 864 FunFam ATPase 4 plasma membrane-type 486 728 - -
Vian11g00055 864 FunFam Plasma membrane ATPase 394 549 - -
Vian11g00055 864 Gene3D - 44 728 - -
Vian11g00055 864 PRINTS H+-transporting ATPase (proton pump) signature 473 489 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian11g00055 864 PRINTS H+-transporting ATPase (proton pump) signature 358 376 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian11g00055 864 PRINTS H+-transporting ATPase (proton pump) signature 532 557 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian11g00055 864 PRINTS H+-transporting ATPase (proton pump) signature 501 517 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian11g00055 864 PRINTS H+-transporting ATPase (proton pump) signature 673 694 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian11g00055 864 SFLD Haloacid Dehalogenase 224 553 - -
Vian11g00055 864 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 758 IPR023298 -
Vian11g00055 864 FunFam Plasma membrane ATPase 254 401 - -
Vian11g00055 864 NCBIfam plasma-membrane proton-efflux P-type ATPase 40 719 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian11g00055 864 Pfam haloacid dehalogenase-like hydrolase 238 515 - -
Vian11g00055 864 FunFam Plasma membrane ATPase 46 129 - -
Vian11g00055 864 PANTHER CALCIUM-TRANSPORTING ATPASE 41 796 - -
Vian11g00055 864 SFLD p-type atpase 224 553 IPR044492 -
Vian11g00055 864 Gene3D - 45 129 - -
Vian11g00055 864 PRINTS P-type cation-transporting ATPase superfamily signature 501 520 - -
Vian11g00055 864 PRINTS P-type cation-transporting ATPase superfamily signature 242 256 - -
Vian11g00055 864 PRINTS P-type cation-transporting ATPase superfamily signature 92 106 - -
Vian11g00055 864 PRINTS P-type cation-transporting ATPase superfamily signature 396 407 - -
Vian11g00055 864 PRINTS P-type cation-transporting ATPase superfamily signature 524 536 - -
Vian11g00055 864 PRINTS P-type cation-transporting ATPase superfamily signature 418 428 - -
Vian11g00055 864 NCBIfam HAD-IC family P-type ATPase 476 587 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian11g00055 864 NCBIfam HAD-IC family P-type ATPase 42 271 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian11g00055 864 Gene3D - 813 864 - -
Vian11g00055 864 SUPERFAMILY Calcium ATPase, transduction domain A 50 142 IPR008250 -
Vian11g00055 864 ProSitePatterns E1-E2 ATPases phosphorylation site. 244 250 IPR018303 -
Vian11g00055 864 Gene3D - 239 538 IPR023214 -
Vian11g00055 864 Pfam E1-E2 ATPase 51 221 - -
Vian11g00055 864 CDD P-type_ATPase_H 50 754 IPR006534 GO:0008553|GO:0016020|GO:0120029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00055 Vian-Chr11 469970 474019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00055 51 864 Primary Pumps ATPases AT3G42640 83.170 0.0 1414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00055 K01535 - gmx:100782329 1486.86