Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00052 ATGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGACTATCAGCTGTTGGAGGCTGCCACGAACAGCTTTAGCACAAGCAGGATTATGAGAAAGAGTGGTTCTAGAATCATTTACAGAGCTAACTTTGATGAGCATTTCCAGGCAGCTGTGAAGAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATGCGCCATCAGAATATCATAAAACTTATGGGTTATTGTGTTCATGGTCAATCGAGGTTTCTTGTTTATGAATTGGTGGAGAACGGGTCTCTGGAAACTCAATTGCATGGGCCTAATCGAGGGTCATCTTTAACCTGGTATCTAAGGTTAAGAATTGCTGTTGATGTTGCCAGAGCATTAGAATATCTCCATGAACACTCCAATCCTCCTGTGGTTCATCGAGACTTACAATCTTCCAATGTTCTTCTGGATTCTAACTTTAATGCGAAGGCCATGCCTCAGCTAACTGACAGATCGAAGCTTCCAAGTATTCTTGATCCTGTTATCAGAGACACAATGGATTTGAAGCACTTGTATCAGGTTGCTGCAGTTGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCACTCATAACAGACGTGCTGCACTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCATTAAGAGTTACAGAACCCATCAGCTCAGAGAACTCTCATTGA 723 0.4288 MADKKSSVAIFDYQLLEAATNSFSTSRIMRKSGSRIIYRANFDEHFQAAVKKADSDADREFENEVSWLSKMRHQNIIKLMGYCVHGQSRFLVYELVENGSLETQLHGPNRGSSLTWYLRLRIAVDVARALEYLHEHSNPPVVHRDLQSSNVLLDSNFNAKAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPISSENSH 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00052 240 PANTHER OS01G0750732 PROTEIN 161 220 - -
Vian11g00052 240 SUPERFAMILY Protein kinase-like (PK-like) 7 160 IPR011009 -
Vian11g00052 240 Pfam Protein tyrosine and serine/threonine kinase 43 160 IPR001245 GO:0004672|GO:0006468
Vian11g00052 240 ProSiteProfiles Protein kinase domain profile. 23 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00052 240 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Vian11g00052 240 Gene3D Transferase(Phosphotransferase) domain 1 96 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00052 Vian-Chr11 450170 452474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00052 4 160 Receptor kinase-like Gene Family AT1G80640 57.143 2.85e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vian11g00052 PK_Tyr_Ser-Thr 2.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00052 - - gmx:100811491 296.975