Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00049 ATGGAGCAAGCATGGCAGAATTGCTCTCTTCAAATGGAAATGGACGATGACAGGCATGGGGATCTGATGTTAGAAGAGTGCCACACACAAGAGGAGGACTTCCTCAGGGAGATACTTGGTGAACCGGGTTTTTCTTCTGAAACTGAAACTCACCACCACAACTTCACAAGCCCCACAGATGCTGAGACGCTAACAATGGTAGGTTCAAAATCCAAAACCTCTTCTTCTCCCAGAACATATATTCTGTCTTTCGATAGCTCTACCATTATACCAGCCACCCCTCAACCACCGTCTGCTTCCACTCTCTCCGCCAAAAAGCGCCACCAAAATCTCAACCCAGAACAACCAAAACCCAAGTCCACAACCCAAACCGGAAAGAGGACCAGAAACGGTTCCGTGGACCACATCATGGCCGAAAGAAGAAGGAGACAGGAACTCACCGAGAGGTTCATAGCACTTTCAGCCACCATCCCCGGTCTCAAGAAGACGGACAAGAGTTCGATACTGGGGGAAGCGATTAATTACGTGAAAGAACTCAAAGAACGTGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAATCGGTGATGATCCTGAAGAAGAGCGATGTGTGTGAGTCAAGTGAAAGAGATTCGAAGGATTGGTGTAGAATGCTCCCTGATATTGAAGCAAGAGTGATGGAGAATGAGGTGCTGATCGAGATCCATTGTGAGAAGGAAGAAGGAGTTGAGCTCAAATTATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACTGCCACCAGCGTGTTGCCCTTTGGAAATTCAACTCTTGGCATTACCATCATCGCTCAGATGGGTGACGCGTACAAGATGACAGTGAACGATGTGGTGAAAAATCTGAGGAAAGTGTTCATGAATCACATGAACATCAATGGCGATCCGTACTAG 933 0.4695 MEQAWQNCSLQMEMDDDRHGDLMLEECHTQEEDFLREILGEPGFSSETETHHHNFTSPTDAETLTMVGSKSKTSSSPRTYILSFDSSTIIPATPQPPSASTLSAKKRHQNLNPEQPKPKSTTQTGKRTRNGSVDHIMAERRRRQELTERFIALSATIPGLKKTDKSSILGEAINYVKELKERVTELEERNKRGKESVMILKKSDVCESSERDSKDWCRMLPDIEARVMENEVLIEIHCEKEEGVELKLLDHLENLHLCVTATSVLPFGNSTLGITIIAQMGDAYKMTVNDVVKNLRKVFMNHMNINGDPY 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00049 310 Coils Coil 169 196 - -
Vian11g00049 310 Pfam Helix-loop-helix DNA-binding domain 135 179 IPR011598 GO:0046983
Vian11g00049 310 SMART finulus 136 185 IPR011598 GO:0046983
Vian11g00049 310 Gene3D - 120 196 IPR036638 GO:0046983
Vian11g00049 310 PANTHER BHLH TRANSCRIPTION FACTOR 28 302 - -
Vian11g00049 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 199 IPR036638 GO:0046983
Vian11g00049 310 MobiDBLite consensus disorder prediction 45 138 - -
Vian11g00049 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Vian11g00049 310 MobiDBLite consensus disorder prediction 49 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00049 Vian-Chr11 431667 433657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00049 108 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.137 5.93e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian11g00049 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00049 - - pvu:PHAVU_005G181300g 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00049 11 431667 433657 Vian9g00070 9 549684 553400 PCT