Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00048 ATGGAGGAAAACCAGTGGGGGAAGTTGTCTTCCCATATGGAAATGGAGGATGAGGTGTTGAATGAATGTTTGTGCCAGACGAAGACCTTTGATGAAGAGTTTTTAAGAGATATTCTGCAGCAGCCGCAAGAGGGTGCAGCTCCAGATCTTAATACTTTTGGTGAGACAAGCTGTGTGATAAGGGCAGGTGGTGGTGATAAGTTGATGATGAAGAACAGCAACTCATCCATGATGAATAATCTTTGTGGTGAAAATAAGAACAAGGCAACCGCATCTCCAACCACCTATGTACTGTCTTTTGACAAATCCGATGATCCTCATTCTGTGTCTGCTTGGAAAGATGTCTCCCACAAGTTGCCTTTGTCCTCGACAAGGACCAACCAGGGAACCAAGAAGATTCGAAGCGCTTCTGAATCAATGGATCACATCATGTCAGAGAGAAAGAGGAGACAGGAACTCACCAGAAAATTCATAGCACTTGCTTCCACTATCCCTGGCTTGAAGAAGATGGACAAGGCACATGTACTAAGAGAAGCAATAAATTACGTGAAGCAACTGAAAGAACGTGTAGAAGTGCTAGAAGAAGATATCCAGAAGAACGGTGCAGAATCATCGATCACCATAACAAGATCTCATCTATGTATTGATGACACAAACAGTGACGAATGGTATGGGTCCAATGAAGCAGTTCCTGCTGAAGTTGAAGCCAGAGTCTTAGGGAAGCAAGTGTTGATCAAAATTCATTGTGGAAAACAAAAGGGTATTCTGCTCAAAATATTGTCTCAGCTTGAACGTCTTCATCTCTTGATATCCACTAGCAATGTCTTGCCACTTGGAAGTACCATTGACATCACCATCATTGCTCAGATGGGTGATGAATACAAGATGGTGGTGAAGGATCTAGTGAAAGAACTGAGACAAGTGGCTATGATGAAGTCATGTGTGTCACAGTGA 954 0.4287 MEENQWGKLSSHMEMEDEVLNECLCQTKTFDEEFLRDILQQPQEGAAPDLNTFGETSCVIRAGGGDKLMMKNSNSSMMNNLCGENKNKATASPTTYVLSFDKSDDPHSVSAWKDVSHKLPLSSTRTNQGTKKIRSASESMDHIMSERKRRQELTRKFIALASTIPGLKKMDKAHVLREAINYVKQLKERVEVLEEDIQKNGAESSITITRSHLCIDDTNSDEWYGSNEAVPAEVEARVLGKQVLIKIHCGKQKGILLKILSQLERLHLLISTSNVLPLGSTIDITIIAQMGDEYKMVVKDLVKELRQVAMMKSCVSQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00048 317 PANTHER BHLH TRANSCRIPTION FACTOR 56 310 - -
Vian11g00048 317 SMART finulus 143 192 IPR011598 GO:0046983
Vian11g00048 317 Pfam Helix-loop-helix DNA-binding domain 142 187 IPR011598 GO:0046983
Vian11g00048 317 Coils Coil 176 203 - -
Vian11g00048 317 Gene3D - 128 202 IPR036638 GO:0046983
Vian11g00048 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Vian11g00048 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 204 IPR036638 GO:0046983
Vian11g00048 317 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00048 Vian-Chr11 424705 426914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00048 128 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.277 1.76e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian11g00048 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00048 - - vum:124843254 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00048 11 424705 426914 Vian9g00069 9 540358 542489 PCT
Vian9g00070 9 549684 553400 Vian11g00048 11 424705 426914 PCT