LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian11g00040	ATGCCTTCAAGACCCTTTCCTCCCACAAGTCCCACCAAAACCAAGGCCCTCTTCCTAGCACTCACCATTTCAGCTTGTGTTGTTATTTTCTGCTCGATTGTTTACTTCCTCTACCATCTGTGGCTTTCTCTAGTTCACAGAGCTAAGACCATCCCCTTTGATGCAAGTGCTCCCTTGAAGCTCCAAAGATTCTCGTACAAAGATTTAAAGCAGGCCACCAATGGCTTCGATACTGCCAATGTAATTGGCAAAGGCGGCTCTGGCACTGTTTTCAGAGGCGTACTTAAAGACGGCAAGTTGATTGCCATCAAGCGTCTGGACGCATTGTCTTTGCAGTCAGAGAGAGAGTTTCAAAACGAGCTGCAGATTCTTGGAGGGTTAAGGTCACCATTCTTGGTGACTCTTTTGGGTTACTGTGTGGAAAGGAACAAAAGAGTGCTGGTGTATGAGTATATGCCCAACAGAAGCTTGCAGGAGTCCCTCTTTGGAGATGAGGGTTTGAGTTTGAGTTGGGAGAGAAGGTTCTGCATAATATTGGATGTTGCTAGAGCTATGGAGTTCTTGCACCTTGGATGTGATCCTCCGGTGATCCATGGTGATATCAAGCCAAGCAATGTTCTGCTCGATGCAGAGTGGCGCGGGAAGATCTCCGACTTTGGTTTGTCAAGGATTAAGGTGGAGGGTGAATTTGGTGTTGACTTGTTTAGCCAGGACCTAGGGAGGAGCCAGGATCTATGGAAAAGCCAAGAGCTTTCAGGTAATTTGACTAATTTGACTGCAGAAACTCCTGCTATTGGTACTCCGGTTGAGAGTGTCAGTGAAGTAGATTTTGCTCTAGCTTTGCAAGCCTCTTCTTCATCAAAAAACAGTAGGACCTGCTTTAATGTTAAAGCTTTGAATTTGAATTCTTTGAATTATAATGCCAATATTGCTGGTGAAAGTGAAATCAGGAGTGTGAATGCAAAGGGTAAAGAAATTTCAGCTTTGGATAGAGATGATTGGAATGGTAAGTTTTTTCCTTATGATGATGAGCATTCTAGCATTGATTATAGTAAGGAGTTAACAGTGAATGCTTCTCCTTTGGTGGATGATGAGAAGGAAAATGGGAAACAATGGGGAAAGGACTGGTGGTGGAGACAGGATGGAAGCGGGGAGCTATGTAGTAAAGACTATGTTATGGAGTGGATTGGGAGTCAGATTTGTCCATCAAACCCTGATTGGGATCATGGTAAGAACAATGTTCCCGAGAAAGTGGAATTGGAAACTTCAAGCCCAAAGGATAAAGAGCAAGATGCAATTGCACCCCAGTCACAGGTGTTTGGGATAGGACACAATACTACAGATAATGGGATTGAGAAAAAAGAGTCAAGGGGAAAGAAAAATCACAAAAAGAAACACAGGAAGATGCAAGAGTGGTGGAGAGAAGAGCATCTAGCTGAATTAAGCAAGAAGACAAATAAACTGAAAAATCTTCACTCTAAATGGAAGAAAGGCATGAAAGTGCCCCATTTTGATTTGGGTAGAAGGTTTTATCTTTGCAGACGTAAGTTTGGAGAGGAGGGTCAGGATGAATGTGAACAAAATGGGGAGTTTAGCTTCAGAAGAGGATGGAAGAAAAAGAGTACTCTTTCCATTGGTAGTGACATGTGGAGTGGAGATCTTTTCAGTCGCGAGCTTAGCAGCACAACTAGCATGAGAGGGACACTGTGTTATGTGGCACCAGAATATGGAGGGTGTGGATTCTTGATGGAGAAAGCTGATATTTATAGTTTTGGAGTTTTGATTCTTGTAATCGTGTCAGGTAGGAGACCGTTACATGTTCTTGCATCACCCATGAAGCTAGAGAAAGCAAACCTGATAAGCTGGTGTAGACACTTGGCTCAAGCTGGTAACATTTTAGAACTAGTGGATGAGAGATTGAAAGAAGATTTCAACAAGGAGCAAGCAAGCCTGTGTATCAATCTGGCCCTCACTTGCTTACAGAAAATTCCTGAGTTGAGGCTAGATATTGGGGATATTGTTAAGATTTTGAAGGGGGAGATGGATCTTCCACCACTTCCATTTGAGCTCTCCCCTTCTCCACCTTCCAAATTATACGGCAAAGCAAGGAGAAAACAGAAGATCACTGCAGAATAG	2136	0.4321	MPSRPFPPTSPTKTKALFLALTISACVVIFCSIVYFLYHLWLSLVHRAKTIPFDASAPLKLQRFSYKDLKQATNGFDTANVIGKGGSGTVFRGVLKDGKLIAIKRLDALSLQSEREFQNELQILGGLRSPFLVTLLGYCVERNKRVLVYEYMPNRSLQESLFGDEGLSLSWERRFCIILDVARAMEFLHLGCDPPVIHGDIKPSNVLLDAEWRGKISDFGLSRIKVEGEFGVDLFSQDLGRSQDLWKSQELSGNLTNLTAETPAIGTPVESVSEVDFALALQASSSSKNSRTCFNVKALNLNSLNYNANIAGESEIRSVNAKGKEISALDRDDWNGKFFPYDDEHSSIDYSKELTVNASPLVDDEKENGKQWGKDWWWRQDGSGELCSKDYVMEWIGSQICPSNPDWDHGKNNVPEKVELETSSPKDKEQDAIAPQSQVFGIGHNTTDNGIEKKESRGKKNHKKKHRKMQEWWREEHLAELSKKTNKLKNLHSKWKKGMKVPHFDLGRRFYLCRRKFGEEGQDECEQNGEFSFRRGWKKKSTLSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGNILELVDERLKEDFNKEQASLCINLALTCLQKIPELRLDIGDIVKILKGEMDLPPLPFELSPSPPSKLYGKARRKQKITAE	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian11g00040	711	FunFam	putative receptor-like protein kinase At1g80870	152	263	-	-
	Vian11g00040	711	FunFam	Receptor-like serine/threonine-protein kinase At4g25390	45	151	-	-
	Vian11g00040	711	Coils	Coil	474	494	-	-
	Vian11g00040	711	ProSitePatterns	Protein kinases ATP-binding region signature.	82	104	IPR017441	GO:0005524
	Vian11g00040	711	SMART	serkin_6	76	676	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian11g00040	711	PANTHER	OS07G0586332 PROTEIN	10	706	IPR044576	-
	Vian11g00040	711	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	26	-	-
	Vian11g00040	711	Coils	Coil	705	711	-	-
	Vian11g00040	711	FunFam	Receptor-like serine/threonine-protein kinase At4g25390	534	683	-	-
	Vian11g00040	711	MobiDBLite	consensus disorder prediction	692	711	-	-
	Vian11g00040	711	Gene3D	Transferase(Phosphotransferase) domain 1	538	683	-	-
	Vian11g00040	711	Gene3D	Transferase(Phosphotransferase) domain 1	152	263	-	-
	Vian11g00040	711	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	196	208	IPR008271	GO:0004672\|GO:0006468
	Vian11g00040	711	MobiDBLite	consensus disorder prediction	440	466	-	-
	Vian11g00040	711	Pfam	Protein kinase domain	78	226	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian11g00040	711	ProSiteProfiles	Protein kinase domain profile.	76	686	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian11g00040	711	SUPERFAMILY	Protein kinase-like (PK-like)	56	695	IPR011009	-
	Vian11g00040	711	Gene3D	Phosphorylase Kinase; domain 1	45	151	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian11g00040	Vian-Chr11	362363	364498	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian11g00040	545	677	Receptor kinase-like Gene Family	AT3G58690	29.851	1.15e-11	65.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Vian11g00040		Pkinase	3.2e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian11g00040	-		-	gmx:100807432	1311.98