Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00035 ATGGCGTGGGGCCAAACTTTCAGTCATCCTCACACCCTGCTTCCAAGCAATCAAATAAAGGTTGGTGCTGAGTTCATCGGAACCTTCATTCTCATGTTTGCCGCCACTGCTGCCGCCATTGTCAACCAGAAGACAAACGGCTCTGAGACACTCATAGGCTGTGCTGCCACCACTGGTCTCGCCGTTATGATCGTCATCCTTGCCACTGGCCATATCTCCGGTGCTCATCTCAATCCGGCTGTCACTCTTTCCTTTGCTGCATTGAAGCACTTTCCATGGAAGCATGTGCCTATGTATATTGGTGCACAAGTTTTGGCATCTATTTGTGCTGCATTTGCTCTAAAAGGGGTTTATCATCCTTTCATGAGTGGTGGAGTCACAGTTCCTTCCGGAGGATATGGCCAATCTTTTGCTTTGGAATTCATTATTGCTTTCAATCTCATGTTTGTTGTCACTGCAGTTGCCACCGACACTAGAGCTTATTTGGAATCTTGCTGGTTTGCACCACAGAGTGATATTTTTCCTACTATGAACATAAAAACACCAACATCACCCTTATTAAAATCAAGCACAGATCTAGAAACACCAGTATCAGGCGGCTCAATGAACCCAGTAAGAACATTAGGTCCTGCCATTGCAGCAAACAACTACAAAGCTATATGGGTTTATCTGATAGCTCCCGTACTTGGAGCTCTAGCCGGTGCAGGTACTTATACTGCAGTGAAGCTACCTGAAGAAGACGATGATGCCAAAGCAAAGGCTTCAATAAGCTTCAGAAGGTGA 783 0.4572 MAWGQTFSHPHTLLPSNQIKVGAEFIGTFILMFAATAAAIVNQKTNGSETLIGCAATTGLAVMIVILATGHISGAHLNPAVTLSFAALKHFPWKHVPMYIGAQVLASICAAFALKGVYHPFMSGGVTVPSGGYGQSFALEFIIAFNLMFVVTAVATDTRAYLESCWFAPQSDIFPTMNIKTPTSPLLKSSTDLETPVSGGSMNPVRTLGPAIAANNYKAIWVYLIAPVLGALAGAGTYTAVKLPEEDDDAKAKASISFRR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00035 260 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00035 260 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00035 260 PRINTS Major intrinsic protein family signature 95 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00035 260 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00035 260 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00035 260 PRINTS Major intrinsic protein family signature 139 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00035 260 SUPERFAMILY Aquaporin-like 15 247 IPR023271 -
Vian11g00035 260 Gene3D Glycerol uptake facilitator protein. 5 253 IPR023271 -
Vian11g00035 260 Pfam Major intrinsic protein 20 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00035 260 ProSitePatterns MIP family signature. 76 84 IPR022357 -
Vian11g00035 260 PANTHER AQUAPORIN NIP2-1 18 246 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00035 Vian-Chr11 319458 325735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00035 20 260 Major Intrinsic Protein MIP AT1G80760 68.880 8.54e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00035 K09874 - gmx:100815637 376.711