Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00034 ATGTCAGGTGAAGAGGTAGTTGTTGCAGCTGAGGCACCTGCTGCCATTCCCGGTGAACCCATGGACATCATGACTGCTTTACAGCTTGTGCTGAGAAAATCTCTGGCTTACGGTGGGCTTGCAAGAGGTCTTCACGAAAGTGCCAAGATCATTGAGAAGCATGCTGCACAGCTCTGCGTTCTAGCAGAAGATTGTGACCAACCTGATTATGTGAAACTGGTGAAGGCCCTTTGCGCCGAGCACAATGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTCTGGTTGTCGTGTTGCATGGTATTCTTTGTAACATTTTTGTTGAATATTTTTGTCAGTTATGTAAGATTGACTCAGAAGGAAAGGCCAGGAAGGTAACTGGTTGCTCATGTGTGGTTGTTAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCACGTGAAAGCTAACTAA 480 0.4604 MSGEEVVVAAEAPAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHESAKIIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLVVVLHGILCNIFVEYFCQLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00034 159 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 26 102 IPR004038 -
Vian11g00034 159 Gene3D - 7 159 IPR029064 -
Vian11g00034 159 SUPERFAMILY L30e-like 20 157 IPR029064 -
Vian11g00034 159 ProSitePatterns Ribosomal protein S12e signature. 26 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vian11g00034 159 PRINTS Ribosomal protein S12E family signature 85 106 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vian11g00034 159 PRINTS Ribosomal protein S12E family signature 44 60 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vian11g00034 159 PRINTS Ribosomal protein S12E family signature 30 43 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vian11g00034 159 PANTHER 40S RIBOSOMAL PROTEIN S12 15 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00034 Vian-Chr11 313366 314752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00034 16 159 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 65.278 2.09e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00034 K02951 - gmx:100500093 250.366