Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00027 ATGGCTGCCAAAACCTCACACAAAACCCTCTGCGTCGACTCTCCCATGCTCAAGAAGAAGCGCCCACGCAAAACCATTCCAAGAGACACTCCCTTGCCACGAACCTCACCCTACAGGGGTGTTACCAGGCATCGATGGACAGGTCGATTCGAGGCTCATCTCTGGGATAAAACTTCCTGGAATCAATCGCAGAACAAGAAAGGAAGACAAGTATATCTGGGAGCATACGACGATGAAGATGCCGCGGCACGTGCTTATGATTTGGCAGCATTGAAGTATTGGGGTCCGGAAACCGTCCTCAATTTCCCTCTATCAAATTATGAACAACAGCTTAAGGAGATGGAGGATCAATCTAAGGAAGAGTACATCGGATCCTTAAGAAGAAAAAGTAGCGGCTTCTCTCGGGGAGTCTCAAAATTCAGAGGCGTAGCAAGACACCATCATAATGGAAGATGGGAAGCACGAATTGGCAGAGTCTTCGGCAATAAATATCTATACCTTGGAACATACGGTACAGAAGAAGAAGCAGCAGTGGCATACGATATGGCGGCCATAGAATACCGTGGACTTAATGCTGTTACCAACTTTGACCTCAGTCGTTATATGAAATGGCTACGTCCAAAAGACCAATCTCAACCTCGACTTCAAGCCCACGATGACAGCCCAAGCCCAACACCATCTGGACCTGAATCTCGAAATGCCACCTCAACATTGGGCCCTCCACCGCCGCCGCCACCTTCTTCACCCTCCACCTCAAACCTTCCTCCTCGTCCTCCTCGCACATTCCCCGAAGATATTCAAACTTTGTTTGAAACTCAAGATTCAGCGGGAATCTACACAGACACTGATGACATTATATTTGGCGACTTGACCTCCATTGCTTCACCAATTTTTCATTGTGACCTTAATGCTTAA 915 0.4765 MAAKTSHKTLCVDSPMLKKKRPRKTIPRDTPLPRTSPYRGVTRHRWTGRFEAHLWDKTSWNQSQNKKGRQVYLGAYDDEDAAARAYDLAALKYWGPETVLNFPLSNYEQQLKEMEDQSKEEYIGSLRRKSSGFSRGVSKFRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTEEEAAVAYDMAAIEYRGLNAVTNFDLSRYMKWLRPKDQSQPRLQAHDDSPSPTPSGPESRNATSTLGPPPPPPPSSPSTSNLPPRPPRTFPEDIQTLFETQDSAGIYTDTDDIIFGDLTSIASPIFHCDLNA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00027 304 Pfam AP2 domain 38 95 IPR001471 GO:0003700|GO:0006355
Vian11g00027 304 Pfam AP2 domain 138 189 IPR001471 GO:0003700|GO:0006355
Vian11g00027 304 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700|GO:0006355
Vian11g00027 304 Gene3D AP2/ERF domain 138 199 IPR036955 GO:0003700|GO:0006355
Vian11g00027 304 Gene3D AP2/ERF domain 37 105 IPR036955 GO:0003700|GO:0006355
Vian11g00027 304 SUPERFAMILY DNA-binding domain 36 105 IPR016177 GO:0003677
Vian11g00027 304 MobiDBLite consensus disorder prediction 207 263 - -
Vian11g00027 304 FunFam AP2-like ethylene-responsive transcription factor 138 199 - -
Vian11g00027 304 SMART rav1_2 139 203 IPR001471 GO:0003700|GO:0006355
Vian11g00027 304 SMART rav1_2 37 109 IPR001471 GO:0003700|GO:0006355
Vian11g00027 304 CDD AP2 138 199 IPR001471 GO:0003700|GO:0006355
Vian11g00027 304 MobiDBLite consensus disorder prediction 236 262 - -
Vian11g00027 304 PRINTS Ethylene responsive element binding protein signature 179 199 IPR001471 GO:0003700|GO:0006355
Vian11g00027 304 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vian11g00027 304 SUPERFAMILY DNA-binding domain 138 199 IPR016177 GO:0003677
Vian11g00027 304 MobiDBLite consensus disorder prediction 216 235 - -
Vian11g00027 304 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 245 - -
Vian11g00027 304 FunFam AP2-like ethylene-responsive transcription factor 36 105 - -
Vian11g00027 304 ProSiteProfiles AP2/ERF domain profile. 37 103 IPR001471 GO:0003700|GO:0006355
Vian11g00027 304 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00027 Vian-Chr11 272288 276299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00027 12 201 AP2-EREBP Transcription Factor Family AT1G72570 64.737 7.36e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vian11g00027 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00027 K09285 - gmx:100807781 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00027 11 272288 276299 Vian11g00027 11 272288 276299 ECH