Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00026 ATGAAGAAGACGAACGCTTTGTCGGTCTCAACCACACGCACTTACAGTTCTCTCTACTTCAATCCTCTGAACCACCCCAGCCACTGCCGAAGCTCCAGCACTGACTGTGTCGGAAAATCTCAGTTTGAATTTGAAGATGAACACCCCGACAAGGAAAACCACAATGTCAATGTCAACAAGCCCAAGCCTTTCAGGTCTCTCTCCACTGACAGAATCTTGAAGCCCTCCTCGCTTGAATTCTGCATGCAGATGAACCACTTTCAAACCTCCCTCAACATCTGGGACTACTCTGATTCTGAGTCTGCTCCTGCTTCCTCCTGGTCCTTGATCTGTAGACCCTTGCCCTTAGATGTTGGAAGGTGCACATGTTTTATTCTCAAGGAGCAAACGCCACATGGACTGTCAGGGGGCACTTTCTTCTCTCTTTATACCAATGAAGGCCAGGGACGGCAGAACAGGAAACTGGCCGTGGCCCACCACAAACGGCGGAATGGGAGGTCTTACTTCACCGTAGCTCAGAGTGTAAAAGGATTACTCTCCCATTCTGATGATACTTTTCTTGGCACAGTAACAGCTAACCTCATAGGCTCAAAATACTACATTTGGGATCAGGCGTATCGTCGTAATTCCGGCGGTAAACAACCAAAGCCACCTCTTGCTGTTGTGACCTATATACCCACCATAACAACGTGTACAGGAAGTCACAGAAGCATGAGAGCATATGTACCCAAGCATCAATGCATGCCACTCAAGAACACAAACCAGGTACAACATATAAAGGGATTGCCAATGAATTGGGAGGGAAAGTTGGACAAAGTCCATCAACTGTTCTCAAAGGCCCCACTTTACAACAAGATTTCAAAACAATATGAGCTTGACTTCAGAGATAAAGGAAAGGCAGGACTCAAAATCCAAAGATCAGTTAAAAATTTCCAGCTAACTTTAGAGGAGAATGGGAGTCAGACGATACTGCAGCTGGGGAGGGCAGGAAAATCAAAATTCGTCATGGACTACAGGTACCCTTTGACAGGTTACCAGGCGTTTTGCATGTGTTTAGCTTCCATGGATGCAAAGCTCTGTTGCACAGTGTAA 1092 0.4634 MKKTNALSVSTTRTYSSLYFNPLNHPSHCRSSSTDCVGKSQFEFEDEHPDKENHNVNVNKPKPFRSLSTDRILKPSSLEFCMQMNHFQTSLNIWDYSDSESAPASSWSLICRPLPLDVGRCTCFILKEQTPHGLSGGTFFSLYTNEGQGRQNRKLAVAHHKRRNGRSYFTVAQSVKGLLSHSDDTFLGTVTANLIGSKYYIWDQAYRRNSGGKQPKPPLAVVTYIPTITTCTGSHRSMRAYVPKHQCMPLKNTNQVQHIKGLPMNWEGKLDKVHQLFSKAPLYNKISKQYELDFRDKGKAGLKIQRSVKNFQLTLEENGSQTILQLGRAGKSKFVMDYRYPLTGYQAFCMCLASMDAKLCCTV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00026 363 Gene3D Tubby Protein; Chain A 104 362 IPR025659 -
Vian11g00026 363 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Vian11g00026 363 PRINTS Tubby superfamily signature 340 362 IPR000007 -
Vian11g00026 363 PRINTS Tubby superfamily signature 299 315 IPR000007 -
Vian11g00026 363 PRINTS Tubby superfamily signature 319 338 IPR000007 -
Vian11g00026 363 Pfam Tub family 112 356 IPR000007 -
Vian11g00026 363 SUPERFAMILY Tubby C-terminal domain-like 109 362 IPR025659 -
Vian11g00026 363 PANTHER TUBBY-RELATED 68 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00026 Vian-Chr11 269635 271649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00026 64 256 TUB Transcription Factor Family AT1G16070 54.338 2.84e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vian11g00026 Tub 1.2e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00026 K19600 - gmx:100803500 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00026 11 269635 271649 Vian11g00026 11 269635 271649 ECH