Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00022 ATGAAGCTCACCGTCAAGACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCTGTGAAGAAAAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATCCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCAGACAATAAGGTCTCTGAGGATGGCTTTCTTGTTGTAATGCTTAGTAAGCTGGTGATTGGGCATGTGTTACAGCCTGCTAGCAACCCACCTATAACTGTATCAACACCAAATTCCTCGTCTCTAGTACAAACCCAATCTGCTAACAATAATGCTCCTGCAACAGATGTCACAACTACAAATGTGACTACGGATACTTATGGCCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAGCAAATTATAGACATGGGTGGTGGCAGTTGGGACAGAGATACAGTTAGTCGTGCTCTCCGAGCAGCTTACAATAACCCAGAGCGTGCTGTGGACTACCTGTATTCAGGAATTCCTGAAGCAGCAGAAATTGCTGTGCCAGCTGCTCCTTACCCAAATAGTCAGACAACTGAAACAGATGGGGTCACTGCCGGAGCTGTTCCTGGTGTCCCTAACTCTTCTCCCTTGAATATGTTTCCACAGGAAGCAATTTCTGGTGTTGGAGCCGGAATTGGGTCACTTGACTTTCTAAGAAACAATCCCCAGTTTCAAGCATTGCGATCAATGGTGCAATCCAATCCGCAAATTCTGCAGCCTGTACTTCAGGAGCTTGGAAAGCAGAATCCTGGTCTCTTAAGAGTAATTCAAGAGAATCATGCTGAGTTTCTCCAGTTGATTAACGAACCTATTGAGGGTTCAGAAGGTGATATATTTGATCAACCTGAACAAGACATGCCTCATGCAATCAATGTGACGCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTAGCATGTGACCGTGACGAGCAATTGGCAGCCAACTACTTATTAGAAAATGCTGGAGATTTTGAGGATTAA 1089 0.4399 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKLVIGHVLQPASNPPITVSTPNSSSLVQTQSANNNAPATDVTTTNVTTDTYGQAASNLVAGSNLEQTIQQIIDMGGGSWDRDTVSRALRAAYNNPERAVDYLYSGIPEAAEIAVPAAPYPNSQTTETDGVTAGAVPGVPNSSPLNMFPQEAISGVGAGIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRVIQENHAEFLQLINEPIEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00022 362 SUPERFAMILY UBA-like 297 359 IPR009060 GO:0005515
Vian11g00022 362 FunFam UV excision repair protein RAD23 homolog 309 357 - -
Vian11g00022 362 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vian11g00022 362 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Vian11g00022 362 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 316 356 IPR015940 -
Vian11g00022 362 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 351 - -
Vian11g00022 362 Gene3D - 309 357 - -
Vian11g00022 362 FunFam UV excision repair protein RAD23 homolog 132 182 - -
Vian11g00022 362 Gene3D - 1 77 - -
Vian11g00022 362 FunFam UV excision repair protein RAD23 B 227 293 - -
Vian11g00022 362 Pfam XPC-binding domain 237 292 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vian11g00022 362 CDD Ubl_Rad23 1 74 - -
Vian11g00022 362 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vian11g00022 362 PRINTS DNA repair protein Rad23 signature 329 343 IPR004806 GO:0006289
Vian11g00022 362 PRINTS DNA repair protein Rad23 signature 312 328 IPR004806 GO:0006289
Vian11g00022 362 PRINTS DNA repair protein Rad23 signature 263 285 IPR004806 GO:0006289
Vian11g00022 362 PRINTS DNA repair protein Rad23 signature 344 359 IPR004806 GO:0006289
Vian11g00022 362 SMART ubq_7 1 75 IPR000626 GO:0005515
Vian11g00022 362 SMART CBM 235 278 IPR006636 -
Vian11g00022 362 Pfam UBA/TS-N domain 318 353 IPR015940 -
Vian11g00022 362 Pfam UBA/TS-N domain 139 177 IPR015940 -
Vian11g00022 362 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 137 180 IPR015940 -
Vian11g00022 362 MobiDBLite consensus disorder prediction 94 116 - -
Vian11g00022 362 SUPERFAMILY UBA-like 136 186 IPR009060 GO:0005515
Vian11g00022 362 SMART uba_6 139 179 IPR015940 -
Vian11g00022 362 SMART uba_6 318 355 IPR015940 -
Vian11g00022 362 SUPERFAMILY XPC-binding domain 235 300 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vian11g00022 362 Gene3D - 228 292 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vian11g00022 362 Gene3D - 132 182 - -
Vian11g00022 362 CDD UBA1_Rad23_plant 133 182 - -
Vian11g00022 362 NCBIfam UV excision repair protein Rad23 1 361 IPR004806 GO:0006289
Vian11g00022 362 FunFam UV excision repair protein RAD23 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00022 Vian-Chr11 234588 239639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00022 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.372 2.24e-07 47.8