Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian11g00022 | ATGAAGCTCACCGTCAAGACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCTGTGAAGAAAAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATCCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCAGACAATAAGGTCTCTGAGGATGGCTTTCTTGTTGTAATGCTTAGTAAGCTGGTGATTGGGCATGTGTTACAGCCTGCTAGCAACCCACCTATAACTGTATCAACACCAAATTCCTCGTCTCTAGTACAAACCCAATCTGCTAACAATAATGCTCCTGCAACAGATGTCACAACTACAAATGTGACTACGGATACTTATGGCCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAGCAAATTATAGACATGGGTGGTGGCAGTTGGGACAGAGATACAGTTAGTCGTGCTCTCCGAGCAGCTTACAATAACCCAGAGCGTGCTGTGGACTACCTGTATTCAGGAATTCCTGAAGCAGCAGAAATTGCTGTGCCAGCTGCTCCTTACCCAAATAGTCAGACAACTGAAACAGATGGGGTCACTGCCGGAGCTGTTCCTGGTGTCCCTAACTCTTCTCCCTTGAATATGTTTCCACAGGAAGCAATTTCTGGTGTTGGAGCCGGAATTGGGTCACTTGACTTTCTAAGAAACAATCCCCAGTTTCAAGCATTGCGATCAATGGTGCAATCCAATCCGCAAATTCTGCAGCCTGTACTTCAGGAGCTTGGAAAGCAGAATCCTGGTCTCTTAAGAGTAATTCAAGAGAATCATGCTGAGTTTCTCCAGTTGATTAACGAACCTATTGAGGGTTCAGAAGGTGATATATTTGATCAACCTGAACAAGACATGCCTCATGCAATCAATGTGACGCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTAGCATGTGACCGTGACGAGCAATTGGCAGCCAACTACTTATTAGAAAATGCTGGAGATTTTGAGGATTAA | 1089 | 0.4399 | MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKLVIGHVLQPASNPPITVSTPNSSSLVQTQSANNNAPATDVTTTNVTTDTYGQAASNLVAGSNLEQTIQQIIDMGGGSWDRDTVSRALRAAYNNPERAVDYLYSGIPEAAEIAVPAAPYPNSQTTETDGVTAGAVPGVPNSSPLNMFPQEAISGVGAGIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRVIQENHAEFLQLINEPIEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED | 362 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian11g00022 | 362 | SUPERFAMILY | UBA-like | 297 | 359 | IPR009060 | GO:0005515 | |
Vian11g00022 | 362 | FunFam | UV excision repair protein RAD23 homolog | 309 | 357 | - | - | |
Vian11g00022 | 362 | Pfam | Ubiquitin family | 3 | 76 | IPR000626 | GO:0005515 | |
Vian11g00022 | 362 | SUPERFAMILY | Ubiquitin-like | 1 | 79 | IPR029071 | - | |
Vian11g00022 | 362 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 316 | 356 | IPR015940 | - | |
Vian11g00022 | 362 | PANTHER | UV EXCISION REPAIR PROTEIN RAD23 | 1 | 351 | - | - | |
Vian11g00022 | 362 | Gene3D | - | 309 | 357 | - | - | |
Vian11g00022 | 362 | FunFam | UV excision repair protein RAD23 homolog | 132 | 182 | - | - | |
Vian11g00022 | 362 | Gene3D | - | 1 | 77 | - | - | |
Vian11g00022 | 362 | FunFam | UV excision repair protein RAD23 B | 227 | 293 | - | - | |
Vian11g00022 | 362 | Pfam | XPC-binding domain | 237 | 292 | IPR015360 | GO:0003684|GO:0006289|GO:0043161 | |
Vian11g00022 | 362 | CDD | Ubl_Rad23 | 1 | 74 | - | - | |
Vian11g00022 | 362 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515 | |
Vian11g00022 | 362 | PRINTS | DNA repair protein Rad23 signature | 329 | 343 | IPR004806 | GO:0006289 | |
Vian11g00022 | 362 | PRINTS | DNA repair protein Rad23 signature | 312 | 328 | IPR004806 | GO:0006289 | |
Vian11g00022 | 362 | PRINTS | DNA repair protein Rad23 signature | 263 | 285 | IPR004806 | GO:0006289 | |
Vian11g00022 | 362 | PRINTS | DNA repair protein Rad23 signature | 344 | 359 | IPR004806 | GO:0006289 | |
Vian11g00022 | 362 | SMART | ubq_7 | 1 | 75 | IPR000626 | GO:0005515 | |
Vian11g00022 | 362 | SMART | CBM | 235 | 278 | IPR006636 | - | |
Vian11g00022 | 362 | Pfam | UBA/TS-N domain | 318 | 353 | IPR015940 | - | |
Vian11g00022 | 362 | Pfam | UBA/TS-N domain | 139 | 177 | IPR015940 | - | |
Vian11g00022 | 362 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 137 | 180 | IPR015940 | - | |
Vian11g00022 | 362 | MobiDBLite | consensus disorder prediction | 94 | 116 | - | - | |
Vian11g00022 | 362 | SUPERFAMILY | UBA-like | 136 | 186 | IPR009060 | GO:0005515 | |
Vian11g00022 | 362 | SMART | uba_6 | 139 | 179 | IPR015940 | - | |
Vian11g00022 | 362 | SMART | uba_6 | 318 | 355 | IPR015940 | - | |
Vian11g00022 | 362 | SUPERFAMILY | XPC-binding domain | 235 | 300 | IPR036353 | GO:0003684|GO:0006289|GO:0043161 | |
Vian11g00022 | 362 | Gene3D | - | 228 | 292 | IPR036353 | GO:0003684|GO:0006289|GO:0043161 | |
Vian11g00022 | 362 | Gene3D | - | 132 | 182 | - | - | |
Vian11g00022 | 362 | CDD | UBA1_Rad23_plant | 133 | 182 | - | - | |
Vian11g00022 | 362 | NCBIfam | UV excision repair protein Rad23 | 1 | 361 | IPR004806 | GO:0006289 | |
Vian11g00022 | 362 | FunFam | UV excision repair protein RAD23 | 1 | 79 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian11g00022 | Vian-Chr11 | 234588 | 239639 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian11g00022 | 1 | 86 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 38.372 | 2.24e-07 | 47.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian11g00022 | K10839 | - | gmx:100804038 | 605.52 |