Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00019 ATGATGGAGTCAAGAAAAAGCGCAGTGTTGCTGATATTTGTTTCAGTTTCAGTGTGGCAGCTGCAGGGTGGAAGTAGCAGTGTTGTGGTATCGAAGGATGGAAGTGGAGATTATAGAACGGTGGGTGAAGCCATTATGCAGGCTCCTGACATGAGTGATAAACCCTATACCATTCACGTACGAGCAGGCACTTATCAAGAGTACCTCTTCGTTCCTCCTCATAAGACTAACATTAGGCTCCTTGGAGATGGACCTCACCACACCAAAATAGTAGGCTACCAAAATGGTTCCACCATTGACATTCGTGGAGATGGGTTCATGGCAGCGAAGATGGGATTTGCGAACTGGGCAGGGCTGAACGCAAGCAGTGCAGTGGCGGTTCGGAACGAGGCAGACAAGAGCATATTCTTCCAATGCTCCATCGAAGGACTCCAGGACACACTGTGGGCGGTTTCCGGGCGTCAGTTCTACAAAAAGTGCGATATCTACGGCACGGTGGACTTCATCTACGGCAGCGCAGCGGCGGTGTTCCAGGACTGCATGGTGTACGCGCGGTACAGAGAGTACGTGACGTTCACGGCTCAGTCGCGAGAGGATCCGAATGAGAAAAGCGGGTTCAGTTTCCAAAGATGCGAATTCAGAATGGCGCCGGAGGATGAGAACAGAAAGAGAGAGGTGCATGCGAGCCTTGGGCGTCCCCTGAGACCCTATTCCACCGTCGCCATCCTCCACTCGTACATTGACTCCATCGTCGATCCTAAAGGTTGGGAGCCCATGCCCCACCAGCCCACCGACAAAGTCACCTACATCGAGTTTCAGAATGTTGGGCCGGGCTCTAACACCGACGACAGAGTTAACTGGGCCGGCGTCACGGTCCTTAGATACCCGGCCCAAGCAGCCCATTTCACTGCCTCCTATCTCTTAGACGCCGACTCTTGGATTCCCTCTTCCGGTGTTCCGTACAACACCGGACTATAG 978 0.5307 MMESRKSAVLLIFVSVSVWQLQGGSSSVVVSKDGSGDYRTVGEAIMQAPDMSDKPYTIHVRAGTYQEYLFVPPHKTNIRLLGDGPHHTKIVGYQNGSTIDIRGDGFMAAKMGFANWAGLNASSAVAVRNEADKSIFFQCSIEGLQDTLWAVSGRQFYKKCDIYGTVDFIYGSAAAVFQDCMVYARYREYVTFTAQSREDPNEKSGFSFQRCEFRMAPEDENRKREVHASLGRPLRPYSTVAILHSYIDSIVDPKGWEPMPHQPTDKVTYIEFQNVGPGSNTDDRVNWAGVTVLRYPAQAAHFTASYLLDADSWIPSSGVPYNTGL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00019 325 PANTHER PECTINESTERASE 26 315 - -
Vian11g00019 325 Gene3D - 25 325 IPR012334 -
Vian11g00019 325 FunFam Pectinesterase 25 321 - -
Vian11g00019 325 Pfam Pectinesterase 28 310 IPR000070 GO:0030599|GO:0042545
Vian11g00019 325 SUPERFAMILY Pectin lyase-like 27 323 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00019 Vian-Chr11 213677 215450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00019 26 325 Carbohydrate Esterase AT4G03930 41.853 2.19e-75 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00019 K01051 - gmx:102665195 493.426