Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00018 ATGGCCATTGAAACAGAACAGGGGAAGGAGTTCATTTTCAGGTCCAAGCTTCCTGATATATACATCCCCAAACACCTTCCCCTCCACGCCTACTGCTTCCAAAATTTGCCAGACCACGCCTCACGCCCCTGCTTGATCAATGCCCCCACCGGAAAAGTCTACACCTACTCCGACGTCGACGCCACCGCCCGAAAAGTGGCGGCGGGCCTCCACAGATTGGGCGTGCGACAGGGCGAGGTCATCATGATTCTTCTCCCCAACTGCCCCGAATTCGTCTTTGCGTTTCTCGGGGCGTCTCATCGTGGCGCCGTGGCCACTGCTGCCAACCCCTTCTTCACCCCGGCGGAGATTGCGAAGCAAGCCAAGGCATCCAAGGCCAAGGTGCTCATCACGCAGGCCTCTTACTACGAAAAGGTGAAGGAGCTGGAGGAGGTGAAGTTGGTGTTCGTGGACTCGTGTCCGGTGGCGGAGGCAGATGGCGGTCACGTCCATTTCTCAGAGTTGTGTGAGGGCGAGGGGGAGATGGATGAGGTGGAGATAAGAGCGGATGACGTGGTGGCATTGCCGTATTCGTCGGGGACAACGGGGCTTCCGAAAGGTGTGATGCTGACGCACAAGGGGCTGGTGACGAGCATTGCTCAGCAGGTGGATGGCGAGAATCCGAACCTCTACTACCATCCCGACGACACCATCCTCTGCGTGCTTCCCCTGTTCCACATATACTCCCTCAACTCTGTTCTTCTCTGTGGCTTGCGTTCCAAGGCTGCCATTCTCCTCATGCCCAAGTTCGACATCAACGCCCTCCTCGCCCTCATTTACAAACACAGAATCACCGTTGCCCCCGTCGTCCCACCCATCGTTCTCGCCGTTGCCAAGTCACCTGATCTCGCCAACTACGACCTCTCTTCCATCAGGCTCTTCAAGTCCGGCGGAGCTCCTCTCGGTAAAGAGCTTGAAGACACTGTGAGGGCCAAATTCCCCAACGCCAGACTCGGCCAGGGTTACGGTATGACCGAGGCAGGCCCTGTGCTCACAATGTCCTTAGCTTTTGCTAAAGAACCCATGCACGTGAAAGCAGGTGCATGCGGAACCGTCGTGAGAAACGCAGAGATGAAGATCGTGGATCCTGAAACCGCCCAATCCCTATCTCGAAACCAGTCCGGTGAAATCTGCATAAGAGGCGACCAGATCATGAAAGGTTATCTAAACGACAAAGAGGCTACAGAGAGAACGATAGACAAAGATGGGTGGTTGCACACAGGTGACATCGGTTACATCGACGATGACGATGAGTTATTCATCGTTGACAGGTTAAAGGAACTTATCAAATACAAAGGGTTTCAGGTGGCTCCGGCTGAACTCGAAGCGCTTCTTCTCACTCATCCTAACATCTCTGACGCTGCCGTCGTTCCAATGAAGGATGAAGCGGCGGGAGAAGTACCTGTGGCATTTGTGGTGAGATCAAATTCTTCCATCGACACAACCCAGGATGAAATCAAGAACTTCATCTCCAAACAGGTCGTGTTTTACAAGAGAATAAACACAGTATTCTTCGTTGATGCAATTCCCAAGTCACCCTCAGGCAAAATCTTACGTAAGGATCTACGAGCAAAGCTAGCAGCACCAGCAGCTGTATCAAAATGA 1644 0.5341 MAIETEQGKEFIFRSKLPDIYIPKHLPLHAYCFQNLPDHASRPCLINAPTGKVYTYSDVDATARKVAAGLHRLGVRQGEVIMILLPNCPEFVFAFLGASHRGAVATAANPFFTPAEIAKQAKASKAKVLITQASYYEKVKELEEVKLVFVDSCPVAEADGGHVHFSELCEGEGEMDEVEIRADDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHPDDTILCVLPLFHIYSLNSVLLCGLRSKAAILLMPKFDINALLALIYKHRITVAPVVPPIVLAVAKSPDLANYDLSSIRLFKSGGAPLGKELEDTVRAKFPNARLGQGYGMTEAGPVLTMSLAFAKEPMHVKAGACGTVVRNAEMKIVDPETAQSLSRNQSGEICIRGDQIMKGYLNDKEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPNISDAAVVPMKDEAAGEVPVAFVVRSNSSIDTTQDEIKNFISKQVVFYKRINTVFFVDAIPKSPSGKILRKDLRAKLAAPAAVSK 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00018 547 FunFam 4-coumarate--CoA ligase 2 440 542 - -
Vian11g00018 547 Pfam AMP-binding enzyme C-terminal domain 453 529 IPR025110 -
Vian11g00018 547 SUPERFAMILY Acetyl-CoA synthetase-like 13 541 - -
Vian11g00018 547 CDD 4CL 22 535 - -
Vian11g00018 547 Pfam AMP-binding enzyme 39 444 IPR000873 -
Vian11g00018 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - -
Vian11g00018 547 Gene3D - 440 542 IPR045851 -
Vian11g00018 547 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Vian11g00018 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 439 - -
Vian11g00018 547 Gene3D - 10 439 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00018 Vian-Chr11 210690 212548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00018 5 507 Monolignol Biosynthesis Gene Families AT1G51680 70.760 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00018 K01904 - gmx:100819192 882.863