Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00017 ATGGGTTCGCTCGAGGAAAAGATAGAGCGCGATCCTTTCGACAACCTTAACGATGACGACGACCACACTCCCTTCGCTTCTTCCACATCCGCCTCCAAAGTCCGCCCCTTCAATTTCGAGACCACCGTTGTCGATTTACGGAGCTCCTCCGCCTTCAACATTAGACGCATCAGCAGGAGTATATATTTCGTCTTAATTAAGGCCAAGATCAACATCTTGCTTCCGTTTGGTCCTTTCGCTATTCTACTGCATTATCTCACCGGACACCAAGGATGGGTCTTCTTCTTCACGTTATTGGGCATTACTCCTTTGGCCGAACGTCTCGGTTATACCACCGAGCAGCTTGCCTTCTTTACGGGACCAACAGTTGGGGGTCTGCTTAATGCCACATTTGGCAATGCAACTGAAATGATTATATCCATTTACGCATTGAAAAGCAATATGATAAGGGTTGTGCAGCAATCTTTACTCGGTTCTATCCTGTCAAATATGCTTCTGGTTCTTGGCTGTGCTTTCTTTACTGGTGGCATTGCCCACTACAAAAAAGTACAGGTTTTTGATAAGACTTTACACTGTAGTTTGCGTCTGCAACAGGCAGCTGCCATTGTCAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATTCTGTTTCCTGCTGTGCTTTACTTTACTCACTCAGAAGTTCATGAAGGGAAGTCAGTGTTGTCTCTATCAAGATTTAGCAGCTGCATAATGCTGCTGGCATATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAGCAAAATGTTTATACTCCAGTTAATGAGGAAGGAGATGATGGTGAAAATTCTGATGAGGAAGAAGAACTTGAATTAACTCAATGGGAGGCAATAGCCTGGCTTGCTATTTTGACAGCATGGATGTCTATATTGTCTGGATACCTCGTAGATACCATAGAGGGTGCATCTAAGTCATTAAATATGTCAATGGCTTTTATTTCTGTCATCTTGCTTCCAATTGTTGGCAACGCTGCAGAACATGCCAGTGCCATCATGTTTGCCGTAAAGGACAAGCTTGATATTACTATTGGAGTTGCTATAGGATCGTCTACACAGATATCTATGTTTGTGATCCCCTTCTGTGTAGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACGCTTTTTATCACCGTGTTGGTAGTTGCATTTATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGCTTGATGCTTGTGCTGTGCTATCTTATAGTTGCTGCCAGTTTTTTTGTACATGATGACCCTATTAAAAGTGTGTCCTTTTGA 1335 0.427 MGSLEEKIERDPFDNLNDDDDHTPFASSTSASKVRPFNFETTVVDLRSSSAFNIRRISRSIYFVLIKAKINILLPFGPFAILLHYLTGHQGWVFFFTLLGITPLAERLGYTTEQLAFFTGPTVGGLLNATFGNATEMIISIYALKSNMIRVVQQSLLGSILSNMLLVLGCAFFTGGIAHYKKVQVFDKTLHCSLRLQQAAAIVNSGLLLMAVMGILFPAVLYFTHSEVHEGKSVLSLSRFSSCIMLLAYASYLFFQLRSQQNVYTPVNEEGDDGENSDEEEELELTQWEAIAWLAILTAWMSILSGYLVDTIEGASKSLNMSMAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLVLCYLIVAASFFVHDDPIKSVSF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00017 444 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 45 438 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vian11g00017 444 MobiDBLite consensus disorder prediction 1 20 - -
Vian11g00017 444 NCBIfam calcium/proton exchanger 64 433 - -
Vian11g00017 444 Gene3D - 121 269 IPR044880 -
Vian11g00017 444 Gene3D - 277 434 IPR044880 -
Vian11g00017 444 Pfam Sodium/calcium exchanger protein 291 430 IPR004837 GO:0016020|GO:0055085
Vian11g00017 444 Pfam Sodium/calcium exchanger protein 92 257 IPR004837 GO:0016020|GO:0055085
Vian11g00017 444 NCBIfam calcium/proton exchanger 73 433 IPR004798 GO:0006816|GO:0015369
Vian11g00017 444 FunFam Vacuolar cation/proton exchanger 121 270 - -
Vian11g00017 444 FunFam Vacuolar cation/proton exchanger 278 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00017 Vian-Chr11 199729 209233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00017 59 438 Antiporters AT3G13320 72.441 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00017 K07300 - gmx:100806000 696.812