Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00006 ATGTTGGTTAAAATTCAAACAAATTGGTTTGTCCCGGTTGCAGTTCCATTCTCAGTCCCACACAAGCTCGAGGGTTGTTTTGTGATGAGTAAGTGCGTGTTATCCACGCATACTCCTACTCTATTTGAAGTCGATAATGATAAAGCAAGAAGAAGAAGAAGATCAAATTGGAGTTGTGGTTGTGGTTCGGAGGAGGCAAATGTACAGAGACAGGATCTCTCTGAATCTGAATCCAAACGGGAATTGGAAGTGCAGGAAGCTCGCAGGGCCATTTCAAGTTATCTCGGAGAATTGGGAGTGTCAGAGGAGGAATCGTTGTCCATCGCGTGGAATTGCCCGGGGTATGTGAAGATGTTGGTGGAAGGTGTGAAGGATTTGGATGAGTGGGGTTGGGAGACAGATGAAGAAATTGAGGGATTGAGCTTCAAGGACAAGATTCTTCGTGTTGCCGCTCAAAAAGGAGACAAGGGGAAAATTGCCTACTTAGAGACTCTTGGTCTCACTCTCTCTTGGTCTATCAACGTCGCCGGATATCTCTCCGCTCACACCCTCCCCTCTCTAATACACAAGGTTACGCGCATCAAGCAACTCTTCTTTTCTCCTCCCGATAACGACGGCGATCACCACCCCTCGTTGCTCATGAGAAACATTCTCCTCACCATGCGCCACTTGTCCATTTCAATTGACGAAGACCTGCAACGCACTTTCTCCTTTTTCGAAAAGCTTCAAGCAAAGCCTGGTGGCTTAAACATCTTGGCTTCCCAAGATTCTGCTTTCTCTTCCTTAATCCAATCCTTCCCTCGTATGCTTCACTTATCCTTAGATAACCACTTAACACTCATACTGGATTCTCTCCTCAACTTTGGAATCCCCACATCTCGCATCTCACTCATAATACTGGCTTTCCCTCCTCTTCTCTTCTGGAATCTTCAAATCCTGCAAACTAGACTCCTCGCCGTCAAGCAGATTAACGTTGCTGATCAAGATTATGCCAAGTTTCTGCTAAAATATCCTTGGTTTCTGTCGACAAGTATTCAAGAAAATTATGCGGAGCTCCTTGCCTTTTCGTATTCTATCAAGGTTCCAAAGACACAGATAGACCATGCAATTGAAAGCCACCCTCATCTATTGAGCTGTTCAACAAGCAAGCTCGAGTTGATGGTAGATCAGTTTGCTAAACTTGGAGTTCGGAAGAAAAAGTTAAGTCAGGTTATTACTAGAAGTCCTCAATTGCTACTACGGAAGCCCAAAGACTTTCTACAGATTGTTCTGTTGTTTGAAAATATGGATTTAGATAAAGAAACTATAGGAAGAATACTTGCCCGCTGCCCTGAAATTTTTGCTTCCAGCATTAATAAAACTTTACAAAGGAAGATTGAGTTCCTTGGTAGGGTTGGCATTTGTAAGGCTTTCCTACCTGGGGTTATCAGAAAGTATCCTGAATTACTTGTATCTGACATTGACAAAACTTTACTACTAAGGATAATATACTTGATGAAGTTAGGTCTTTCAGAAGAAGAGATAGCATTTATGGTACGCACATTTTCTCCTCTTCTTGGGTACAGTATAGAGGGGGTTCTTAAGCCAAAAATTGAATTCCTGGTGAACTCAATGGAGAGGCCAGTAAGAGATGTGGTGAGTTACCCTCGGTATTTTAGCTATTCACTAGAGAAGAAAATAAAGCCAAGATATTGGGTGTTGAAAAGAAGGGATATCAAATGTAGCTTAAAGGATATGCTGGGAAAAAATGATGAAGAATTTGCCGCTGAGTTTATGGGTATTGGAGGGATGCCCGTCTCTCATCCCGTTTCTTCTAATGATAGCCTGTAA 1830 0.4268 MLVKIQTNWFVPVAVPFSVPHKLEGCFVMSKCVLSTHTPTLFEVDNDKARRRRRSNWSCGCGSEEANVQRQDLSESESKRELEVQEARRAISSYLGELGVSEEESLSIAWNCPGYVKMLVEGVKDLDEWGWETDEEIEGLSFKDKILRVAAQKGDKGKIAYLETLGLTLSWSINVAGYLSAHTLPSLIHKVTRIKQLFFSPPDNDGDHHPSLLMRNILLTMRHLSISIDEDLQRTFSFFEKLQAKPGGLNILASQDSAFSSLIQSFPRMLHLSLDNHLTLILDSLLNFGIPTSRISLIILAFPPLLFWNLQILQTRLLAVKQINVADQDYAKFLLKYPWFLSTSIQENYAELLAFSYSIKVPKTQIDHAIESHPHLLSCSTSKLELMVDQFAKLGVRKKKLSQVITRSPQLLLRKPKDFLQIVLLFENMDLDKETIGRILARCPEIFASSINKTLQRKIEFLGRVGICKAFLPGVIRKYPELLVSDIDKTLLLRIIYLMKLGLSEEEIAFMVRTFSPLLGYSIEGVLKPKIEFLVNSMERPVRDVVSYPRYFSYSLEKKIKPRYWVLKRRDIKCSLKDMLGKNDEEFAAEFMGIGGMPVSHPVSSNDSL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00006 609 Gene3D Transcription termination factor 3, mitochondrial 383 595 IPR038538 -
Vian11g00006 609 SMART mt_12 473 504 IPR003690 GO:0003690|GO:0006355
Vian11g00006 609 SMART mt_12 542 573 IPR003690 GO:0003690|GO:0006355
Vian11g00006 609 SMART mt_12 437 468 IPR003690 GO:0003690|GO:0006355
Vian11g00006 609 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Vian11g00006 609 SMART mt_12 509 541 IPR003690 GO:0003690|GO:0006355
Vian11g00006 609 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Vian11g00006 609 SMART mt_12 402 432 IPR003690 GO:0003690|GO:0006355
Vian11g00006 609 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Vian11g00006 609 FunFam Mitochondrial transcription termination factor family protein 382 595 - -
Vian11g00006 609 PANTHER CGI-12 PROTEIN-RELATED 497 592 IPR003690 GO:0003690|GO:0006355
Vian11g00006 609 Pfam mTERF 282 588 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00006 Vian-Chr11 85715 91789 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian11g00006 mTERF 8.2e-91 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00006 K15032 - gmx:100802127 858.596