Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00004 ATGGGGGCGCGCTCTGCTTCGGTGGTGCGCGCACCATTCATGAATGTGAAGCTGAAGCTGTGGTTGAGCATGGTTAAGGGTAACGTAGTTGTGTTGGTATTGGCATCAATATTAATATCATCAAGCTGGTGCACATCAGCCAAAGCCATGTATTCTGATGCGGAGGCGCTGGTGAAGTTCAAGAAGTCGTTGACAAACACAGTGGCCTTGAAAAGTTGGGATGCAACCACAAACTCAAAGCCACCTTGCTCTGGAAACATTCCAAACTGGGTGGGCTTGTTTTGTTTGAGGGACAAGGTTTGGGGGTTGCGACTCGAGAACATGGGCCTAACAGGCAATATCGATATAATGACTCTGGCTTCCATCCCCGCTCTCCGCTCTGTTAGCCTGATGAACAACACCTTTGTGGGTCCCTTACCTAGCGTAAGGTTGCTGCCAAATCTCAAGGCCCTCTACCTCTCCTACAATCATTTCTCAGGACAGATTCCCGACGATGAATTTAAGGGTTTGCATAAATTGAGGAAACTTTATTTGTCCAATAATGAGTTCACAGGTCAAATTCCTTCCTCCATTGCCACCTTGCCTTCTCTCCTCATCCTCCGTCTCGACTCAAACAAGTTTCAAGGTCAAATCCCCCTCTTCCAGCACTTTAATACTACTAGTTATTATCCTTTGAGGATCATCAACTTTTCTAACAATCAGTTGGAGGGTCCCATTCCGCCCAGTCTAATCACCTTCGGCGCCTCCCCATTTAGCGGTAACCCTGGACTATGCGGGGCGCCCCTCAAGAATGTGTGCCAAGAGGTAGCCACTCCGTCCAAAATGCGTCTTCTAAAAATTTTACTAGCTATTGTCACGAGTGCATTGATTGTAGCCATCCTGGTTATAGTATTGGTGATATATCGGTTGAGGTCACTGACATCCCAACTGCAACAACAATCTTCAGCAGAAGATCATATGGCTTCAACGTTGCAGGGCCAGGTCCAGGTTCCTCCCATTTATGTCAAAACTAAAAGCCTAGCGGATCACTACGATGCTAGTCCCAGGCAAGCGTCATCATTTCAGGGTCTTGGACGTGCACGTTCCAGGAGGGTGGAACCAGGCAAACTCATATTCCTCAGGCCTCAAGAACCTATGTTTGATTTGCAGGATTTGCTAAGGTCCTCCGCTGAAATTCTTGGAAGTGCAGGATTTGGGTCCTCCTACAAGGCCGTCATTTTAGACGGTTACCCCGTTGTTGTCAAGAGGTACAAGCATATGAACAATTTGCCCAGAGAGGAGTTCCACGAGCACATGCGAAGACTAGCCAATCTCAACCATCCCAATCTTCTCCCTCTCCTCGCCTATTATTATAAAAGGGAAGAAAAGCTTCTCCTCTCTGCCTTTGTTCACAACGGTTGCTTGGCCAGTCATCTTCATGGCAATCATAACTCCCAAAAGCTTGGACTTGACTGGCCAACTCGTTTGAAAATCGTGAAAGGTATAGCCAGGGGTTTGGCTTACCTATACAGTGCACTCCCAAGTGTAATTGTGCCTCATGGTCATCTCAAATCTTCCAACGTCCTTTTGGATGAATCCTTCGAGCCCCTTCTCACTGATTATGCCCTCAGCCCCGTCATCAACCTTGACCATGCCCAAAAAGTTATCTTGCCTTACAAATCTCCAGAATATGCTCAACTTGGGCGCATTACAAAGAAGACTGATGTGTGGAGTTTTGGAATTCTGATTCTGGAGATCTTGACGGGCAAATTCCCTGAGAACTATCTCACACTTAGGCATAATACTGATTCTGACATAGCCAGTTGGGTCAATACCATGATTACTGAGAAACGCACCAGTGACATGTTTGACGTAGAGATGGGAGGAATTGGAAATTGTAAAGCTGAATTACTCAAGCTCCTGAAGATTGGCTTGAGTTGTTGTGAGGAGAATGTGGAAAGAAGGCTTGATATCAAGGAAGCTCTTGAGCAAATTGAAGACTTGAAAGAGAGGGAAAATGATGCTATTAATGGAGAATACTCCTCCACTCTCATGACCACAGAAAGAAATACTTACAGAGCTGTCTGA 2067 0.4615 MGARSASVVRAPFMNVKLKLWLSMVKGNVVVLVLASILISSSWCTSAKAMYSDAEALVKFKKSLTNTVALKSWDATTNSKPPCSGNIPNWVGLFCLRDKVWGLRLENMGLTGNIDIMTLASIPALRSVSLMNNTFVGPLPSVRLLPNLKALYLSYNHFSGQIPDDEFKGLHKLRKLYLSNNEFTGQIPSSIATLPSLLILRLDSNKFQGQIPLFQHFNTTSYYPLRIINFSNNQLEGPIPPSLITFGASPFSGNPGLCGAPLKNVCQEVATPSKMRLLKILLAIVTSALIVAILVIVLVIYRLRSLTSQLQQQSSAEDHMASTLQGQVQVPPIYVKTKSLADHYDASPRQASSFQGLGRARSRRVEPGKLIFLRPQEPMFDLQDLLRSSAEILGSAGFGSSYKAVILDGYPVVVKRYKHMNNLPREEFHEHMRRLANLNHPNLLPLLAYYYKREEKLLLSAFVHNGCLASHLHGNHNSQKLGLDWPTRLKIVKGIARGLAYLYSALPSVIVPHGHLKSSNVLLDESFEPLLTDYALSPVINLDHAQKVILPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYLTLRHNTDSDIASWVNTMITEKRTSDMFDVEMGGIGNCKAELLKLLKIGLSCCEENVERRLDIKEALEQIEDLKERENDAINGEYSSTLMTTERNTYRAV 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00004 688 Gene3D Phosphorylase Kinase; domain 1 370 462 - -
Vian11g00004 688 Pfam Leucine rich repeat 146 207 IPR001611 GO:0005515
Vian11g00004 688 ProSiteProfiles Protein kinase domain profile. 387 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00004 688 FunFam Nuclear pore complex protein NUP107 50 213 - -
Vian11g00004 688 SUPERFAMILY Protein kinase-like (PK-like) 390 662 IPR011009 -
Vian11g00004 688 Gene3D Ribonuclease Inhibitor 50 220 IPR032675 -
Vian11g00004 688 SUPERFAMILY L domain-like 77 262 - -
Vian11g00004 688 Pfam Leucine rich repeat N-terminal domain 52 95 IPR013210 -
Vian11g00004 688 Pfam Protein tyrosine and serine/threonine kinase 391 656 IPR001245 GO:0004672|GO:0006468
Vian11g00004 688 Coils Coil 644 671 - -
Vian11g00004 688 Gene3D Ribonuclease Inhibitor 221 266 IPR032675 -
Vian11g00004 688 Gene3D Transferase(Phosphotransferase) domain 1 463 684 - -
Vian11g00004 688 FunFam Pollen receptor-like kinase 1 463 672 - -
Vian11g00004 688 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 37 666 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00004 Vian-Chr11 74226 76474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00004 52 679 Receptor kinase-like Gene Family AT5G35390 48.362 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian11g00004 PK_Tyr_Ser-Thr 3.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00004 - - pvu:PHAVU_005G185800g 1107.05