Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01894 ATGTCTGTGACATCCAAGGTCATGCCTGCACTCCACTCTATCAAATCGTTGCCCCCTGAATTCAAGATTAGTTCTGGTAAAATGGAAAACCATGGAGATGCGAAATTGAGAAGCAGTGATGCCACTGGATCAAGTAGTCCGGAAAACGATGCTTTGGTAGGGGAGGTTTCTGAGCAAGCTCTTAACCATGCGGGTGACGTGGGTCTTTATGATGAGGATGTAGCGTACAGCAGAAAAGGTGTTTCATTAGAGGACAGATCGTCCATTGCTGATGAAGACCTTGAAACCGTTCCTCTGTCCTTCCCATCAATTTCAATGTCCTCCAGAGAACGCAGGTGGAGTGATACCACTCCTTATTCTTCGAAAAAGAAGCTTCAGTCTTGGTTTCAACTTCCGAATGGGAACTGGGAGCTGGGGAAGATGATATCAACTTCTGGAAATGAATCCATCATTTTACTGTCTGACGGAAAGGTTTTGAAAGTGAAAGAAGAAAGTTTAGTGCCAGCAAATCCTGATATCCTTGATGGGGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCGTCTGTTTTATACAACCTGCAATATAGATACAATCAAAACATGATTTATACAAAAGCAGGGCCTGTTTTGGTTGCAATAAATCCCTTTAAGAAAGTTCCTCTATATGGTAATGATTATATTGAAGCCTACAAGCGTAAAGCAATTGAAAGCCCTCATGTATATGCAATAACAGACACAGCCATCCGAGAAATGATACGGGACGAAGTAAATCAATCTATAATTATAAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGTATGAAATCTTGAAGACTAATCCAATATTAGAAGCCTTTGGTAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATCTCCGGTGCTAATATTCAAACATTCTTGCTGGAAAAGTCTAGAGTAGTCCAGTGCAATGAAGGGGAAAGATCCTATCATATATTTTATCAGTTATGTGCTGGTGCACCTCCATCTCTAAGGGGGAAGCTAAACCTTCAAAATGCAGAAGATTATAAATATCTGAGGCAGAGCAATTGTTATTCAATTACTGGTATTAATGATGCAGAAGAGTTTCGCACAGTCATGGAAGCTCTTGATGTTGTTCACATTAGTAAAGAAGACCAGGAGAATGTATTTGCAATGCTTGCTGCTGTATTATGGTTGGGAAACATATCTTTCACTGTAATTGATAATGAAAACCATATTCAAGCCGTAGAAGATGAGGGTCTGTTCCATGTAGCCAAATTGATAGGCTGTGACATTGAAGATCTCAAGTTGACTCTATCTACTCGCAAGATGAAAGTTGGTAATGATAATATTGTCCAAAAGTTGACACTATCACAGGCAATTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCATGCCTGTTTGATTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGCACAGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATAGAAACAGTTTTGAGCAGTTCTGCATAAATTATGCTAATGAGAGATTACAGCAACATTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATCCAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAGAAGAGGCCACTGGGGTTGTTGTCCCTGTTAGATGAAGAATCCACTTTTCCAAATGGCACAGATTTAACATTTGCCAACAAGCTTAAGCAGCATTTGAATTCTAATTCATGTTTCAAAGGAGAAAGAGACCAAGCATTTACTGTTCACCATTATGCTGGGCAGGTAACCTATGATACAACTGGATTTCTGGAGAAGAACAGAGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCATGCACATGCCCTCTTCCTCAAATATTTGCATCTCATATGCTCACTCAGTCTGATAAACGAGTAGTTGGTCCCTTGCATAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGCCAATTGTTCCTATTGATGCAACGACTAGAAAGCACTACTCCACATTTTATTCGCTGTATTAAACCAAATAATCTCCAATCTCCTGAATCATATGAGCAAGGGCTTGTATTGCAACAGCTGAGATGTTGTGGGGTCCTTGAAGTCGTTCGAATATCTAGATCGGGTTTTCCAACAAGAATGTCTCACCAAAAGTTTGCCAGAAGATATGGTTTTCTCCTCCTTGATAATGTTGCATCTCAGGATCCACTTAGTGTGTCAGTTGCAATTCTTCATCAGTTTAATATATTGCCTGAGATGTATCAAGTTGGCTACACGAAATTATTTTTCAGAACAGGACAGATCGGTGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGTATTTTACGTGTACAAAGTTGTTTTAGGGGTCACCAAGCTCGTGGTTCTCTCAAGGAGCTTCAGGGGGGAATCAGTACTTTGCAGTCATTTATTAGGGGGCACAAAACCAGAAAGGAGTATTCAGCTTTACTAAAGAGGCATAGAGCTGCTGTTACTATACAGAAGCACGTGAAAGCAGTATTTGCAAGAAACAGAATGAAGAGTATTAGTGATGCGGCAACAGTCATACAAGCAGTTATTCGGGGTTGGTTAGTCAGAAGATGCTCAGGAAATATTGGATTTTTGAAATCTGGAGACATGACGATGAAAGAATCAGATGAGGTTCTGGTTAAGTCATCTTTCCTGGCCGAATTACAGCGCCGGGTACTTCAGGCTGAAGCAGCCTTGAGAGACAAAGAAGAAGAAAATGACATCGTTCGTCAACGGCTCCAGCAATATGAGAGCAGATGGTCTGAATATGAATTAAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGGTCCCTACAATCTAGCCTCTCCATTGCAAAGAAAAGCCTTGCAATTGATGACTCTGAAAGAAATTCAGATGCATCTGTTAATGCAAGTGATGAGAGGGATTACAGCTGGGATGTAGGAGGTAATCACAGACGCCAAGAAAGCAACGGGGCAAGATCAACGAGTGCTGGTTTAAGTGTTATAAGTAGGCTGGCTGAAGAATTCGAGCATCGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAGGTAGAAGCAAGTTTAAGCCCAGATCAAGAGCTTAGGAGGTTAAAACAAATGTTTGAAGCTTGGAAAAAGGATTACGGGGCTAGACTGCGTGAAACAAAAGTCATTTTAAATAAACTTGGCAATGAAGATGGCGCACTTGAGAAAATGAAGAAAAAGTGGTGGGGAAGAAGGAACAGTACACGGATAAATTGA 3519 0.4052 MSVTSKVMPALHSIKSLPPEFKISSGKMENHGDAKLRSSDATGSSSPENDALVGEVSEQALNHAGDVGLYDEDVAYSRKGVSLEDRSSIADEDLETVPLSFPSISMSSRERRWSDTTPYSSKKKLQSWFQLPNGNWELGKMISTSGNESIILLSDGKVLKVKEESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNDYIEAYKRKAIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLRGKLNLQNAEDYKYLRQSNCYSITGINDAEEFRTVMEALDVVHISKEDQENVFAMLAAVLWLGNISFTVIDNENHIQAVEDEGLFHVAKLIGCDIEDLKLTLSTRKMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGERDQAFTVHHYAGQVTYDTTGFLEKNRDLLHLDSIQLLSSCTCPLPQIFASHMLTQSDKRVVGPLHKSGGADSQKLSVATKFKGQLFLLMQRLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLDNVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHQARGSLKELQGGISTLQSFIRGHKTRKEYSALLKRHRAAVTIQKHVKAVFARNRMKSISDAATVIQAVIRGWLVRRCSGNIGFLKSGDMTMKESDEVLVKSSFLAELQRRVLQAEAALRDKEEENDIVRQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERDYSWDVGGNHRRQESNGARSTSAGLSVISRLAEEFEHRSQVFGDDAKFLVEVKSGQVEASLSPDQELRRLKQMFEAWKKDYGARLRETKVILNKLGNEDGALEKMKKKWWGRRNSTRIN 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01894 1172 Coils Coil 967 1015 - -
Vian10g01894 1172 Gene3D - 545 737 - -
Vian10g01894 1172 ProSiteProfiles IQ motif profile. 898 926 IPR000048 GO:0005515
Vian10g01894 1172 MobiDBLite consensus disorder prediction 1040 1076 - -
Vian10g01894 1172 SMART iq_5 920 942 IPR000048 GO:0005515
Vian10g01894 1172 SMART iq_5 897 919 IPR000048 GO:0005515
Vian10g01894 1172 SMART iq_5 848 870 IPR000048 GO:0005515
Vian10g01894 1172 SMART iq_5 871 893 IPR000048 GO:0005515
Vian10g01894 1172 ProSiteProfiles Myosin motor domain profile. 175 847 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01894 1172 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 122 171 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vian10g01894 1172 SMART MYSc_2a 169 848 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01894 1172 PANTHER MYOSIN 168 1165 - -
Vian10g01894 1172 MobiDBLite consensus disorder prediction 21 51 - -
Vian10g01894 1172 CDD MYSc_Myo8 189 835 IPR036022 -
Vian10g01894 1172 FunFam Myosin heavy chain 357 413 - -
Vian10g01894 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 894 IPR027417 -
Vian10g01894 1172 Gene3D Myosin VI head, motor domain, U50 subdomain 414 522 - -
Vian10g01894 1172 Gene3D - 357 413 - -
Vian10g01894 1172 Gene3D - 781 848 - -
Vian10g01894 1172 MobiDBLite consensus disorder prediction 37 51 - -
Vian10g01894 1172 Gene3D Kinesin motor domain 174 780 IPR036961 -
Vian10g01894 1172 ProSiteProfiles IQ motif profile. 851 878 IPR000048 GO:0005515
Vian10g01894 1172 Pfam Myosin head (motor domain) 177 835 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01894 1172 FunFam Unconventional myosin-XIX 545 737 - -
Vian10g01894 1172 Gene3D - 851 899 - -
Vian10g01894 1172 Gene3D - 900 942 - -
Vian10g01894 1172 PRINTS Myosin heavy chain signature 205 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01894 1172 PRINTS Myosin heavy chain signature 259 284 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01894 1172 PRINTS Myosin heavy chain signature 301 328 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01894 1172 PRINTS Myosin heavy chain signature 533 561 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01894 1172 PRINTS Myosin heavy chain signature 586 614 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01894 1172 ProSiteProfiles IQ motif profile. 921 950 IPR000048 GO:0005515
Vian10g01894 1172 MobiDBLite consensus disorder prediction 1062 1076 - -
Vian10g01894 1172 ProSiteProfiles IQ motif profile. 872 901 IPR000048 GO:0005515
Vian10g01894 1172 Pfam IQ calmodulin-binding motif 923 939 IPR000048 GO:0005515
Vian10g01894 1172 Pfam IQ calmodulin-binding motif 876 892 IPR000048 GO:0005515
Vian10g01894 1172 Pfam IQ calmodulin-binding motif 899 919 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01894 Vian-Chr10 31157926 31178738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01894 6 1170 Myosins gene family AT1G50360 75.064 0.0 1805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01894 - K10357 gmx:100781736 2194.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01894 10 31157926 31178738 Vian10g01894 10 31157926 31178738 ECH